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Added vcf to the remote file types. JIRA:TMS-2472
Added multiWig track type. JIRA:TMS-1989
Restored include-track-hubs position in the flags. JIRA:TMS-1956
Added flags, controlling which DB will be queried. Added flag for the use of multiple containers. Added multiple containers to TMgr-DisplayTrackReply. JIRA:TMS-1956
Added client info to TMgr-CreateRemoteTrackRequest and TMgr-RemoveUserTrackRequest. Added handling for client info's context to create_remote_track, remove_user_track and dtrack_remotetms_worker. Added client and context parameters to registerrmt.cgi and removetrack.cgi. JIRA:TMS-1952 JIRA:TMS-1953
Support only file types, defined by UCSC. JIRA:TMS-1875
Added hub-id to TMgr-RemoveUserTrackRequest, removed hub-id from TMgr-DisplayTrack (JIRA TMS-1800)
Added more track types. Added short/long labels per track. JIRA:TMS-1800
Made assebmly-db-name SET OF VisibleString in TMgr-CreateRemoteTrackRequest (JIRA TMS-1800)
Removed duplicate bigWig variant for TMgr-TypeTrackType (JIRA TMS-1802)
Modified to handle hubs (JIRA TMS-1802)
Added create-remote-tracks to TMgr-Request/Reply JIRA:UUD-332
Added export for CreateRemoteTrack structures [JIRA:UUD-332]
Fixed typo JIRA:UUD-332
Added file_type field. JIRA:UUD-332
Made the track-name field optional. JIRA:UUD-332
Added create_remote_track ASN.1 types. JIRA:UUD-332
JIRA:TMS-1538 Added database and program to TMgr-BlastRIDDetail
JIRA:TMS-1518 Added assembly-and-sequence option to genome context
JIRA:TMS-1538 Changed optional flags to default inside TMgr-DisplayTrackRequest
JIRA:TMS-1538 Changed default flags to optional, to ensure compatibility with older services
JIRA:TMS-1538 Added comment for TMgr-BlastRIDDetail.created
JIRA:TMS-1538 Convert TMgr-BlastRIDDetail.created to time_t (INTEGER in ASN.1)
JIRA:TMS-1538 Added expanded-rid-details flag to control return of new BlastRIDDetail fields
JIRA:TMS-1538 Added BLAST RID creation time
JIRA:TMS-1419 Added TMgr-SeqTrackIdRequest and TMgr-SeqTrackIdReply
In TMgr-DisplayTrack changed items to set of TMgr-DatasetItem (JIRA: TMS-1374)
JIRA:TMS-1374 Added flag include-track-items to relevant requests
JIRA:TMS-1374 Added optional set of items to TMgr-DisplayTrack
JIRA:TMS-1184 Set reply data to be optional
JIRA:TMS-1184 Fixed syntax error
JIRA:TMS-1184 Added messages to TMgr-SupportedAssembliesReply
JIRA:TMS-1184 Added supported-assemblies request/reply and client
JIRA:TMS-1170 Added trackset-id to TMgr-CreateTracksetReply
JIRA:TMS-1175 Added id to TMgr-TrackSet. Export create-tracksets request/reply
JIRA:TMS-1167 Added TMgr-CreateTracksetRequest/Reply
JIRA:TMS-1167 Export TMgr-RetrieveTracksetRequest and TMgr-RetrieveTracksetReply
JIRA:TMS-1167 Added assembly accession (genome-context) to trackset
JIRA:TMS-1167 Added trackset type
JIRA:TMS-1067 Added request/reply and client for trackset retrieval
Export TMgr-Identity
Added annotation-release-number to TMgr-SwitchTrackContextRequest (JIRA TMS-855)
Added context-attrs to TMgr-ClientInfo (JIRA TMS-677)
JIRA:UUD-83 Added optiona seq stats to TMgr-CreateUserDataItem
Maded included-default-tracks optional (JIRA: TMS-260)
Added include-default-tracks to flags in TMgr-DisplayTrackRequest, JIRA: TMS-260
JIRA:TMS-213 Added seq-align co unts for two-dimensional alignments
JIRA:TMS-132 Added all-assemblies choice to TMgr-AssemblySpec
JIRA:TMS-132 Export TMgr-DTrackId
JIRA:TMS-128 Added TMgr-PositionStats. Added helper functions for length and position stats
Added all genome context
Added all genome context
JIRA:TMS-128 Added stats to display track reply
JIRA:TMS-128 Added dataset item stats
JIRA:TMS-101 Added request/reply for removing user tracks
Added access-key to TMgr-TrackAcl-Permission; Added TMgr-TrackACL-Authorization; Added authoriztion to TMgr-DisplayTrackRequest
JIRA:GBW-1006 Added to the export list
JIRA:GBW-983 Moved trackmgr grid client to the public tree
Added seqids to TMGr-CreateUserDataItem; assembly-acc to TMgr-CreateUserTrackRequest
JIRA:GBW-870 Added refseqgene option to TMgr-GenomeContext. In TMgr-ItemResolverRequest, replaced assembly field with genome-context (TMgr-GenomeContext)
JIRA:GBW-870 TMgr-BlastRIDDetail optional in a TMgr-BlastRIDReply
JIRA:GBW-870 TMgr-BlastRIDDetail required in a TMgr-BlastRIDReply
JIRA:GBW-870 Export TMgr-BlastRIDDetail rather than TMgr-BlastRIDReply
JIRA:GBW-870 Moved TMgr-BlastRIDReply detail to TMgr-BlastRIDDetail, which was also added to TMgr-DisplayTrackReply
JIRA:GBW-870 Removed unnecessary imports
JIRA:GBW-870 Simplify TMgr-BlastRIDReply
JIRA:GBW-870 Import Seq-entry
JIRA:GBW-870 Modified TMgr-BlastQuerySeqs for Bioseq_set
JIRA:GBW-870 Modified TMgr-BlastQuerySeqs.seq-loc-list to be sequence of TMgr-BlastQuerySeqLoc
JIRA:GBW-870 Added include-data flag in TMgr-BlastRIDRequest
JIRA:GBW-870 data field now optional in TMgr-BlastQueryPssm and TMgr-BlastQueryBioseqset
JIRA:GBW-870 Added title to TMgr-BlastRIDReply
JIRA:GBW-870 TMgr-BlastQueryPssm and TMgr-BlastQueryBioseqset are SEQUENCE not CHOICE
JIRA:GBW-870 Updated TMgr-BlastRIDReply, adding label for pssm and bioseq-set
JIRA:GBW-870 TMgr-BlastRIDReply.query-sequences now optional
JIRA:GBW-870 Updated BLAST reply
JIRA:GBW-870 Export TMgr-BlastRIDReply
Modified genome-context to be a single required element
Changed dtrack-id to Dbtag
JIRA:GBW-870 Added access permissions to TMgr-CreateUserTrackRequest
JIRA:GBW-870 Added user identity to TMgr-DisplayTrackRequest
JIRA:GBW-870 Added BLAST, user request/reply. Separated item resolution from display tracks
Changed SEQUENCE OF to SET of, where appropriate
In TMgr-GenomeContext, replaced locality with sequence
Modifed so that VisibleString changed to UTF8String to match r372697 JIRA GB-2655
Added TMgr-TrackAttrValueRequest and TMgr-TrackAttrValueReply JIRA: GBW-677
JIRA: TMS-4 Seq-id not used in trackmgr.asn
copy in preparation for copy to SC 10.0 JIRA: TMS-18
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