Conserved Protein Domain Family
Reelin_subrepeat_Nt

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cd10036: Reelin_subrepeat_Nt 
Additional N-terminal subrepeat of reelin
Reelin is an extracellular glycoprotein involved in neuronal development, specifically in the brain cortex. It contains 8 tandemly repeated units, each of which is composed of two highly similar subrepeats and a central EGF domain. Some family members appear to have an additional subrepeat at the N-terminus as characterized in this model. Consecutive reelin repeat units are packed together to form an overall rod-like molecular structure. Reelin repeats 5 and 6 are reported to interact with neuronal receptors, the apolipoprotein E receptor 2 (ApoER2) and the very-low-density lipoprotein receptor (VLDLR), triggering a signaling cascade upon binding and subsequent tyrosine phosphorylation of the cytoplasmic disabled-1 (Dab1). Genetic deficiency of reelin, or ApoER2 and VLDLR, or Dab1, all exhibit the same phenotypes, including ataxia, cortical layer inversion and abnormal positioning patterns.
Statistics
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PSSM-Id: 197344
Aligned: 8 rows
Threshold Bit Score: 186.523
Created: 28-Mar-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P78509        202 LRDDFDSyhqlq------lnpniWVECNNCETGe--------qCGAIMHGNAVTFCEpygPRELITTGLNTtTASVLQFS 267  human
CAG08723      127 LRDDFDSnllge------ldsgvWSECTNCAVGe--------qCGVLMHGRAVTFCEplgERELVTVPLNTsTASVLQFA 192  spotted green...
NP_001131084  205 LRDDFDSyklqe------lnpniWLQCRNCEVGe--------qCGVIMHSGAVTFCDpygPRELISVQMNTtTASVLQFS 270  western clawe...
XP_425424     311 LRDDFDSylqqe------lnpsmWSECSNCEIGe--------qCGVIMHGSAITFCEpygPRELTTNGLNTtTASVLQFS 376  chicken
XP_002597264   51 LRDDFDSstdi--------ntdiWSHLSGGLVGd--------qCGTVLHDDSLVFCEpkgTRQLISKPLNLtTASVLQFS 114  Florida lancelet
XP_798955     197 LRDDFDSspel--------dytiWSEIYGGNISd--------aCGAVLHGNSALFCDsfgQRELNTVHLNTtTASALQFA 260  purple urchin
XP_002120384  188 FRENFNLgsls---------nnwNTERAVDVTFsn-------tCGVISDNPSALFCNs-hSNTLVTKPLNLtSASTLEFA 250  Ciona intesti...
XP_002296567  361 FDDDFELpprlasapwheivnghYSDACGVNLKeppergnhagYKAAKNENALVFTGv-yKRQAATVGLNVeHGGRVEFH 439  Thalassiosira...
P78509        268 IGSGSCr-fSYSDPSIIVLYAKNn-----SADWIQLe-kIRAPSNV----STIIHILYLPedAKGENVQFQWKQENLrvg 336  human
CAG08723      193 LGSGSCr-fSYADPSIIVSYSLTgtt-ntSDDWVTLe-kIRAPTNS----TTVIHLLPLPhhSKADGVRFRWTQEAPqgp 265  spotted green...
NP_001131084  271 IGSGSCr-fSYSDPGIVVSYTKNn-----SSSWVPLe-rISAPSNV----STIIHIIYLPpeVKGDSVKFRWRQENMqag 339  western clawe...
XP_425424     377 LGSGSCr-fSYSDPSITVSYSKNs-----SADWTQLe-kISAPSNV----STIIHILYLPedAKGENVHFQWKQDYLhag 445  chicken
XP_002597264  115 ISAGTCt-sESRDPSIMISYATFne---vDLDWHKVi-sLRAPTNG----STMTHVVHLPaeVQQDGICLRFLQEAPhlr 185  Florida lancelet
XP_798955     261 ISSGHCk-pGIDDYSITVSFAVNt-----KVDWHIId-kIRAPSDG----STSIHIVHLPvaARTEEVSLRFHQDLAmda 329  purple urchin
XP_002120384  251 VGSGTC---SPTTNQIIVSYKTQs----tSSRWTTLyvvPSVESSG----HGVVHVAMIPtdAEQPNVEIQFSEEVTft- 318  Ciona intesti...
XP_002296567  440 IKMGAItndEFSTCKTAYGGDVTleysvsSGEWIVMa-tMEVWKYRghifQFISHDIPIG--ARSNSTSFRFRQESFna- 515  Thalassiosira...
P78509        337 evyEACWALDNILII 351  human
CAG08723      266 egyESCWGLDNVLLV 280  spotted green pufferfish
NP_001131084  340 dvyEACWALDNILII 354  western clawed frog
XP_425424     446 evyEACWALDNILII 460  chicken
XP_002597264  186 sefKGCWAMDNVAIV 200  Florida lancelet
XP_798955     330 hhyRGCWALDKVLIT 344  purple urchin
XP_002120384  319 -tdESCWWLDDVAIL 332  Ciona intestinalis
XP_002296567  516 --lRDHWAIDDVRIR 528  Thalassiosira pseudonana CCMP1335
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