1WBB,2O8E,1NNE,2O8B


Conserved Protein Domain Family
MUTSd

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smart00533: MUTSd 
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DNA-binding domain of DNA mismatch repair MUTS family
Statistics
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PSSM-Id: 214710
Aligned: 54 rows
Threshold Bit Score: 106.999
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1WBB_A    288 ENTLASV-LD-C-T-VTPMGSRMLKRWLH-M--PVRDTRVLLERQQTIGAL----QDFT--AGLQPV-L-RQV---GDLE 349 Escherichia coli
NP_495451 236 KRTLMSV-LN-H-T-VTTNGYRLLRSSVL-Q--PSTDVYLIQSRQEAIEELig-kPQLK--DKLRRT-L-SRA---HELD 300 nematode
XP_718341 212 GTTLYSF-LN-C-C-LTKMGMRILRTSIL-Q--PSTHENSIILRSESVQELin-dEDAL--ISIRSS-L-KHT---CDLE 276 Candida albicans S...
NP_440990  19 WPRLCQH-LS-TfT-QTPLGAIAARYLLPpS--QWEESRELLAQTQAVESIen-sPESN--WHFKG------I---ADIT 81  Synechocystis sp. ...
NP_390736  12 hkvkeQV-IG-H-A-ASSLGKEMLLE--L-K--PSASIDEIKKQLDEVDEAs---dIIR--LRGQAP-F-GGL---VDIR 72  Bacillus subtilis ...
NP_213851   3 EKDLIKLeFD-K-V-KEVLASYAHSPATK-E--KIQNLKPYTNKEKVKEEIel-sKAFF--DIAENVrL-FEF---EDIR 69  Aquifex aeolicus VF5
NP_212232  11 NIDFYEI-LS-L-VsKYVSNPDTVNLLSN-Q--KILKTKESLEKIFSFVSLir---mLF--ESCKGY-PnSFI---NSLK 75  Borrelia burgdorfe...
YP_627345   3 daskrslnptpmnppminnnnnntppkpL-E--ESLDLKEFIALFKTFFAKerdtIALE--NDLKQT-F-TYL---NEVD 72  Helicobacter pylor...
NP_276868  84 YRDILEL-MMsY-A-HTDYARN--RIMLL-H--PTTDTASMREHIRMVMEAkk-mVEELpvEKLRGL-L-SNIdrpRDPP 152 Methanothermobacte...
NP_229083   9 FPKVVEI-VKkY-A-LSDLGRKHLDTLKP-TvnPWDELELVEELLNYFNRWg--------ePPIKG------L---NDIS 67  Thermotoga maritim...
1WBB_A    350 RILAR---------L--A-LR-TA------RPRDLARMRHAFQQLPELRAQLETVD-SAP--VQALREK-------MG-- 398 Escherichia coli
NP_495451 301 RVIAMciqtstswtV--R-ES-EA------KINQIIKLMHTLKVIQGIRTLLHSAK-MKS--NILIEKTeflkdprFD-- 365 nematode
XP_718341 277 KVFST---------F--L-EP-RGllsqeqEINNIILLKTVLQNTFVIRKSIQNVS-SHL--LVQVKQI-------LE-- 331 Candida albicans S...
NP_440990  82 EPLAR---------V--E-RGgLV------TGLELLAIAGTLAGVRRLRRVIEERD-DL---------E-------IL-- 124 Synechocystis sp. ...
NP_390736  73 GALRR---------A--E-IG-SVl-----SPSEFTEISGLLYAVKQMKHFITQMA------EDGVDIP-------LI-- 119 Bacillus subtilis ...
NP_213851  70 ELLKK---------A--K-LQ-GAi----lGVEDILKILNVINLTKEIRRVLSSHV-QRL---EPLRKV-------YK-- 119 Aquifex aeolicus VF5
NP_212232  76 YPISL---------LlkE-NS-RV------SIENLRDIIVFLDEVLRINLFLHKNS-D----IKHLNVQ-------IL-- 124 Borrelia burgdorfe...
YP_627345  73 AIGLP------------T-PK-SV------KESDLIVIKLTKLGTLHLDEIFEIVKrLRY--IVVLQNA-------FKtf 123 Helicobacter pylor...
NP_276868 153 INFNP---------S--K-AI-LV------ETREDYDLLIDMGLNRYHPVILNPDP-GELdeYELIIYV-------YS-- 203 Methanothermobacte...
NP_229083  68 QEVEK---------V--KsGS-PL------EPWELLRVSVFLEGCDILKKEFEKRE------YSRLKET-------FS-- 114 Thermotoga maritim...
1WBB_A    399 ---Ef--AELRDLLERAIIDTPPVLVRD-GGV-------IASGYNEELDEWR-ALADGAT--------DYLERLEVR-ER 455 Escherichia coli
NP_495451 366 ---Qi-mNILVEKVDDSLLDGKKNSLHL-QNTkc---yaIRHFVAVQLDLAR-QTYEEII--------RNVEETGAR-EI 427 nematode
XP_718341 332 ---HenvQHLLAIINEYIRNDCQWANNS-TELanqranaVKSGVNGLLDVSR-RIRETLL--------EEVSELVAK-LS 397 Candida albicans S...
NP_440990 125 ---Qt-lVAEVRTLPELEQAIHHCLGED-GK--------VAERASPKLGEIR-QKLKAVR--------EQIQQKLQK-II 181 Synechocystis sp. ...
NP_390736 120 ---Hq-hAEQLITLSDLERDINSCIDDH-G-E-------VLDHASETLRGIR-TQLRTLE--------SRVRDRLESmLR 177 Bacillus subtilis ...
NP_213851 120 ---K---LYTFSPLENLIIGSIDPR-----GF-------VKDEASEELLRVR-KSIRAVE--------EEIKKRLDN-LI 171 Aquifex aeolicus VF5
NP_212232 125 ---Sd-lLFLNPELKNLLNELKEHIDVD-ALE-------LKSGVVKEYDSIE-FEIKNLN--------RRVENQIKK-II 182 Borrelia burgdorfe...
YP_627345 124 thlKf-hERLNAIILPPFFNDLIALLDD-EGK-------IKQGANATLDALN-ESLNRLK--------KESAKIIHH-YA 184 Helicobacter pylor...
NP_276868 204 ---Eg-mLELEDTFSTIMVTADSDKHEIvPEC-------VLNYFRKNLELFR-NALEIKRilgmetclHEVVEIMDE-LQ 270 Methanothermobacte...
NP_229083 115 ---------RLSSFREFVEEVNRCIEQD-G-E-------ISDRASPRLREIRtEKKRLS---------SEIKRKADD-FV 166 Thermotoga maritim...
1WBB_A    456 ----E-R--TGLDTLKVGFNAVHG--YY----------IQIS---------RGQS--HLAPINYMRRQT--------LKN 497 Escherichia coli
NP_495451 428 ----A-EyfHGNSSVRLSFSQSRGfhYT----------FVTR---------QAES--VTIPRYFLDVFR--------NRT 473 nematode
XP_718341 398 ----E-E--LEI-FMEYRFEISRG--FF----------IKIK---------GNNTdiNSLPEVLINRVK--------KRK 440 Candida albicans S...
NP_440990 182 ----Q-R---QSNALQEAVITQRGdrFV----------LPIK---------AGYK--EQMPGIVHDSSA--------SGN 224 Synechocystis sp. ...
NP_390736 178 ----S-S--SASKMLSDTIVTIRNdrFV----------IPVK---------QEYR--SSYGGIVHDTSS--------SGA 221 Bacillus subtilis ...
NP_213851 172 ----N-Rp-DSAKFLSDRIVTIRNgrYV----------IPVK---------TSHV--KKIFGIVHGTSS--------SGY 216 Aquifex aeolicus VF5
NP_212232 183 ----SlN--AEYLTSNFVCYKSNK--YT----------LALK---------SNFK--GKIKGNIISISS--------SGE 225 Borrelia burgdorfe...
YP_627345 185 r--sK-E--LAPYLVDTQSHLKHG--HE----------CLLL---------KSGF--SSAIKGVVLERS--------ANG 228 Helicobacter pylor...
NP_276868 271 aaggE-E--VDIDEVV---NSVKA--WAdmklrdlikdIDLSgdevltllnQGMT--AKLERIFDDVLSearsmikkRSG 340 Methanothermobacte...
NP_229083 167 ----RtH--SQILQEQM-YVYRDGr-YL----------FPVK---------ASMK--NAVR-GIVHHLS--------SSG 208 Thermotoga maritim...
1WBB_A    498 -AER--YIIPELKEYEDKVLTSKGKALALEK-----QLYEELFDLLLPHLEALQQSASALAELDVLVNLAERA--YTLN- 566 Escherichia coli
NP_495451 474 -TVT--FNSRKVIAYNDRLEQVVAEMFLASD-----VIVCDMIEEMQPMIPVLYYAMDALSSIDFLCGLATYS--DLRD- 542 nematode
XP_718341 441 -TIE--CTTIELMKQSSRYNDIVSEITTLNS-----TIIHDMYTSINSYTPILLMVSEAIGTLDLLCSFAYFT--SLQKd 510 Candida albicans S...
NP_440990 225 -TLY--VEPQAIVELGNKLRQARRQEQTEEE-----RILRQLSDQVLEVLLDLEHLLAIATRLDLATARVRYS--FWLG- 293 Synechocystis sp. ...
NP_390736 222 -TLF--IEPQAIVDMNNSLQQAKVKEKQEIE-----RILRVLTEKTAEYTEELFLDLQVLQTLDFIFAKARYA--KAVK- 290 Bacillus subtilis ...
NP_213851 217 -TTY--VEPQFVIHLNNKLTELKQKEEEEVR-----KVLQRITEYIGDYAKELLESFEACVEVDFQQCKYRFS--KLVE- 285 Aquifex aeolicus VF5
NP_212232 226 -TFY--IEPNDIVNANNRLNYLSLEKERIIL-----KILRNLSAKVHSNIVLLDNLYNNFLYYDSLKARAIYG--IKTK- 294 Borrelia burgdorfe...
YP_627345 229 -YFY--LLPESAQKIAQKIAQIGNEIDCCIV-----EICQTLSRSLQKHLLFLKFLFKEFDFLDSLQARLNFA--KAYNl 298 Helicobacter pylor...
NP_276868 341 -VEFdpFIKSYPLKIDQREVERVKRLEAASRnlrefEVKVDAATRLGELRGAVEGEIRDIMEFDYRLALGLFA--HEYE- 416 Methanothermobacte...
NP_229083 209 aTVF--LEPDEFVELNNRVRLLEEEERLEIS-----RILRQLTNILLSRLNDLERNVELIARFDSLYARVKFAreFNGT- 280 Thermotoga maritim...
1WBB_A    567 -YTCPTF---IDKPGIRITEGRHPVVEQV 591 Escherichia coli
NP_495451 543 -TCKPTF---GPS--FSISQGRHPILDWD 565 nematode
XP_718341 511 sYTCPEF---A--KEVTIMRSLHPILggn 534 Candida albicans SC5314
NP_440990 294 -AHPPQWltpGDEKPITLRQLRHPLLHWQ 321 Synechocystis sp. PCC 6803
NP_390736 291 -ATKPIM---NDTGFIRLKKARHPLLPpd 315 Bacillus subtilis subsp. subtilis str. 168
NP_213851 286 -GSFPDF---GE--WVELYEARHPVLVLV 308 Aquifex aeolicus VF5
NP_212232 295 -GVFPEI---SN--VLNIFDAHHPLLKds 317 Borrelia burgdorferi B31
YP_627345 299 eFVMPSF---TQKK-MVLENFSHPILKEP 323 Helicobacter pylori HPAG1
NP_276868 417 -LTEPEF---GD--EISLRGALHLNLVGS 439 Methanothermobacter thermautotrophicus str. Delta H
NP_229083 281 -VVKPSS---R----IRLVNARHPLIPKE 301 Thermotoga maritima MSB8
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