Conserved Protein Domain Family
RluA

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COG0564: RluA (this model, PSSM-Id:223638 is obsolete and has been replaced by 440330)
Pseudouridylate synthase, 23S rRNA- or tRNA-specific [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 223638
Aligned: 146 rows
Threshold Bit Score: 137.827
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
17231572 141 QEYETIFRefeqqlqamsdrhryrKHQRQQTRQLLSEsLLPaA---LTIALEQLNEESrqdgierrrlkqerdtalqalk 217 Nostoc sp. PCC 7120
15792057   1 --------------------------MQEKAYKLLALqEK--I---SNREAKDLIDKG---------------------- 27  Campylobacter jejuni
15805985     --------------------------------------------------------------------------------     Deinococcus radiodu...
19173607   5 EAEYFFTYr--------------tNVKERWYRKPIIDvLVSeFrtrTRDYFLSALECG---------------------- 48  Encephalitozoon cun...
3915400    1 ---------------------------MEKAYKILSVqEN--I---SHKKAKALIDSG---------------------- 26  Helicobacter pylori
1175381    7 RDPLKDCEyvfkgdgl-rrvppyyYEYITFAKLRWYGkTLLeV---FNTEFRDRESGYy--------------------- 61  fission yeast
3915436   89 KHRQLDPEyeividgplrkikpyhFTYRTFCKERWRDkKLVdV---FISEFRDRESEYy--------------------- 144 baker's yeast
1723726    4 IKVIEVYTqnglrkvrpyynrrsaFVKGRWLGKLLIDvLVSeFklrPRAYYLDQIRKGt--------------------- 62  baker's yeast
2501674   62 KTKKTDPDyevtidgplrkiepyfFTYKTFCKERWRDrKLVdV---FVSEFRDREPSYy--------------------- 117 baker's yeast
11136009   1 ---------------------------MEKAYKLLSVqEN--I---SHKKAKALIDSG---------------------- 26  Helicobacter pylori...
17231572 218 eaiasaNIKIQNLKQKr---KALSQQLQSQMHAAYSLMNFlgqsvsLQQLMPNGLPtgtgdccapkllhyaathglkpla 294 Nostoc sp. PCC 7120
15792057  28 ------CVFSYGKKVVv---ARALMSDKARFNVIKAKNPQ---------------------------------------- 58  Campylobacter jejuni
15805985   1 --------------------------MGAVMMGAVTTRAP--------LLPPTEKP------------------------ 22  Deinococcus radiodu...
19173607  49 ------VITVNGEAVK----PTRILGMGDVIRHTVHIHDP---------AHPE--------------------------- 82  Encephalitozoon cun...
3915400   27 ------LVSIGGKKLMv---ARKELPKNTHFSVQKVEKPS---------------------------------------- 57  Helicobacter pylori
1175381   62 -----eKAIRNGQVKv----NNQIGNVDTLIENGYIVSH-------HAHRHEPP-Vsd---------------------- 102 fission yeast
3915436  145 -----kRTIENGDVHi----NDETADLSTVIRNGDLITH-------QVHRHEPP-Vts---------------------- 185 baker's yeast
1723726   63 -----yRLIRDGVPLVpdhlMTTIIKNHDVLETTTHKHEPpvkqwcSQEVEAEDLPgri--------------------- 116 baker's yeast
2501674  118 -----sKTIAEGKVYl----NDEPANLDTIIRDGDLITH-------KVHRHEPP-Vts---------------------- 158 baker's yeast
11136009  27 ------LVSIGGQKLMv---ARKELPQNTRFSVQKVEKPS---------------------------------------- 57  Helicobacter pylori...
17231572 295 mgefwwgsscqdkiqgefygacvercqplmgfllsglkptrnlekeqINVIYEDEWLIAVNKPSGLLSVPGr-YIDTQDS 373 Nostoc sp. PCC 7120
15792057  59 -------------------------------------------------IIFEDDKIIAINKPYAYVSEDL--EKKFN-- 85  Campylobacter jejuni
15805985  23 ------------------------------------------------RIIVEHPDFYVVHKPALWLTHPVraRVDVPDL 54  Deinococcus radiodu...
19173607  83 -----------------------------------------------IGVIKEEGDYIVVNKPPGIPCHPT--GGYREYC 113 Encephalitozoon cun...
3915400   58 -------------------------------------------------VIFEDENILALFKPPFIESYDL--ASFFKG- 85  Helicobacter pylori
1175381  103 ---------------------------------------------qpVGIVHEDESYVVIDKPAGVPVHPT--GRYNHNT 135 fission yeast
3915436  186 ---------------------------------------------rpIKVIFEDDNIMVIDKPSGIPVHPT--GRYRFNT 218 baker's yeast
1723726  117 ---------------------------------------------agFNIVFEDESILVIDKPSGIPVHPT--GQFYQNT 149 baker's yeast
2501674  159 ---------------------------------------------kpIDIVFEDEDILVIDKPSSIPVHPT--GRYRFNT 191 baker's yeast
11136009  58 -------------------------------------------------VIFEDENILALFKPPFIESYDL--VSFFKG- 85  Helicobacter pylori...
17231572 374 VLSRLRHMlpeEEMLAAVHRLDQDTSGILLLARDS-QTYRQFSQQFQQRQVYKVYEAILA-GVINTDT------------ 439 Nostoc sp. PCC 7120
15792057  86 --------------AKLLNRLDKETSGVILLCKDE-DFRKLCIEEFKKH-RVYKSYIAVLdG-VLAEE------------ 136 Campylobacter jejuni
15805985  55 LTFMQAETg--ETDLAPPHRLDRETSGAQLLTRDS-DAARTFFTLFKTHLVGKTYLAIVH-GEPEWDR------------ 118 Deinococcus radiodu...
19173607 114 VTKALFGD----EKVACINRLDMPVSGVLILAVRN---HSKCLEAIRDA--KKIYVAKVY-GMFPDK------------- 170 Encephalitozoon cun...
3915400   86 --------------WALLHRLDKETSGVVLLVKENsEFHLKAKKAFKDR-AVKKEYLALTqG-IIEEE------------ 137 Helicobacter pylori
1175381  136 VLHILMKEn-kCSLLYPCNRLDRLTSGLMFFSKSP-KAAEEMRVHMISKSLKKEYVARVIgEfpn--------------- 198 fission yeast
3915436  219 ITKMLQNn--lGFVVNPCNRLDRLTSGLMFLAKTP-KGADNIGDQLKAREVTKEYVAKVVgEfp---------------- 279 baker's yeast
1723726  150 ITELLKLHg---VDALPCYRLDKITSGLLILAKNS-QSAGEIQKSIRSRDMIKIYLARVK-GRFPHSElildnenaaett 224 baker's yeast
2501674  192 ITKMLERq--lGYSVHPCNRLDKPTSGLMFLAKTP-LGADRMGDQMKAREVTKEYVARVKgEfp---------------- 252 baker's yeast
11136009  86 --------------WALLHRLDKETSGVILLVKENsEFHLKAKKAFKDR-AVKKEYLAIVqG-IIEEE------------ 137 Helicobacter pylori...
17231572 440 ------GIIDLPLWGDPENRPYQQVDWQR----GKPSVTNFREIAREGD--YTRVEFVPLTGRTHQLRVHasdVQGLGVV 507 Nostoc sp. PCC 7120
15792057 137 ------VEVNEPIFTIKVKG---GALSKVsk-dGLSALSIITPIMMQs--kKTLAKIVIQTGRTHQIRVH---AKFIKHG 201 Campylobacter jejuni
15805985 119 ------RTLDAPLGDLGLGGANKIQIRQAvvpdGKPAVTDFRVVGRRAG--HALIECYPRSGRLHQIRAH---LAHLGLP 187 Deinococcus radiodu...
19173607 171 ------VDVDKRIGCTEG---RYRHVNAG----GKACLTLFRRLEYRDG--YSLVECRPVTGRTHQIRIH---LQSIGFP 232 Encephalitozoon cun...
3915400  138 ------REINAPILTFKTT----KAFSKIsk-kGQEAVTIITPLKIIn--kKTLLKVGIKTGRTHQIRVH---LKHINHP 201 Helicobacter pylori
1175381  199 ----sgEVICDAPLLTVAPTLGLNRIHPD----GKEASTVFKRIAFDGHt--SLVLCKPLTGRTHQLRVH---LQYLGYP 265 fission yeast
3915436  280 ----etEVIVEKPLKLIEPRLALNAVCQMdekgAKHAKTVFNRISYDGKt--SIVKCKPLTGRSHQIRVH---LQYLGHP 350 baker's yeast
1723726  225 fedtskVTVEMTPIYSIDPKRQFPVGLST----SKDAITKFYPIRYFSHadETVVACKPITGRTHQIRIH---LARLGHP 297 baker's yeast
2501674  253 ----igIVEVDKPVRSVNPKVALNAVCEMsdenAKHAKTVFQRVSYDGQt--SIVKCKPLTGRTHQIRVH---LQYLGFP 323 baker's yeast
11136009 138 ------REINAPILTIKTT----KAFSKIsk-kGQEAVTIITPLKIIn--kKTLLKVGIKTGRTHQIRVH---LKHINHP 201 Helicobacter pylori...
17231572 508 ILGDRFYG----------------------CTAKANRLHLHARELSFLHPRS---------------------------- 537 Nostoc sp. PCC 7120
15792057 202 VVGDEKYAki-----------------------ssDRMYLHSYEIKIFNYHF---------------------------- 230 Campylobacter jejuni
15805985 188 MVGDKIYGrdpqvfldfm---eqgqtpeltARLGLPRQALHAARIAFPWAG----------------------------- 235 Deinococcus radiodu...
19173607 233 IANDIMYGdgeappppqndgvcnaeidgfdDKRKYECIVRHCKGRNNRSFITk--------------------------- 285 Encephalitozoon cun...
3915400  202 IIGDTLYNne------------------psL---AKRLMLHAHKIALLGYEF---------------------------- 232 Helicobacter pylori
1175381  266 IANDPIYAnkrvwg----------pslgknGEGSNESVIMRLSEIGKTETASpllqyewytneteaeakarrdkrlgell 335 fission yeast
3915436  351 IANDPIYSndevwg----------nnlgkgGQADFDIVITKLDEIGKRKPAKswfhsng---------------gygevl 405 baker's yeast
1723726  298 IVNDSVYCshitkype-------rlkfitqFPRWENQQDLDAEELKVRFQKFvdetknncr------------tmetfcp 358 baker's yeast
2501674  324 IANDPIYSnpdiwg----------pdlgrgGLQNYDDIVLKLDAIGKTNPAEswihphs----------------egeyl 377 baker's yeast
11136009 202 IIGDTLYNne------------------psS---AKRLMLHAHKIALLGYEF---------------------------- 232 Helicobacter pylori...
17231572 538 -GKTIHLHIKTPF 549 Nostoc sp. PCC 7120
15792057 231 -RANL-DSGFAKF 241 Campylobacter jejuni
15805985 236 -AQ-MAVEVPLAP 246 Deinococcus radiodurans
19173607 286 -DHYICLHAWKYT 297 Encephalitozoon cuniculi
3915400  233 -EA------IAPK 238 Helicobacter pylori
1175381  336 tGKHCSECGTPLY 348 fission yeast
3915436  406 rQEKCSICESDLY 418 baker's yeast
1723726  359 eCHTVDLKDPVLS 371 baker's yeast
2501674  378 lGRQCEECEAEMY 390 baker's yeast
11136009 233 -EA------IAPK 238 Helicobacter pylori J99
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