Conserved Protein Domain Family
PcnB

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COG0617: PcnB (this model, PSSM-Id:223690 is obsolete and has been replaced by 440382)
tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 223690
Aligned: 75 rows
Threshold Bit Score: 196.089
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
135969    37 QNICNLLNDYTDLYNQKYHNKPe--pLTLRITGGWVRDKLLG--QGSHDLDIAINVMsgEQFATGLNEyl----qqHYAK 108 baker's yeast
15893603   1 ------MNDIIKLIKSIIIEMD----MEAYIVGGYIRDKLMNpkNSASDLDIAFQGD--FEKILDELR------------ 56  Clostridium acetobu...
15894040     --------------------------------------------------------------------------------     Clostridium acetobu...
15895332   1 MDMYRIFNEGQINVLKDIKRACkekkIKAYIIGGAVRDSILN--VKSKDIDVCVEGD--PLIIIKELKs------lKDYV 70  Clostridium acetobu...
10957484     --------------------------------------------------------------------------------     Deinococcus radiodu...
19173101   5 INCTEAEKDIFSLIRSHAKGFGn---VVPRVAGGWVRDKIMG--NPSFDMDIALENIsgYKFAVGLVQ----------SA 69  Encephalitozoon cun...
19115563  45 NETEKELSDIFLNVSKKIGQMDrk-ePEVRFAGGWVRDKLLR--IESHDIDVAIDCMsgFEFAQHLQS--------YLAQ 113 fission yeast
19075619  12 KKVVNLLKKTADFIESKSSSSSs---LEVRLAGGWVRDKLLG--LSSDDLDVTLNKVtgVDFANSIFEyvhsldsdSVIP 86  fission yeast
17230628   1 MSGFVPSTLASENWPFSLEWLP----QPAYMVGGAVRDAMLGrsrEYLDLDFVIPSD--AVKVARTIAh-------rYQA 67  Nostoc sp. PCC 7120
16331730   2 LCPVSHLADLRQQVPFDLALLP----PQACLVGGAVRDALLGrrrEYLDWDFVVPSG--AIETASAIAs-------rYRA 68  Synechocystis sp. P...
135969   109 YGAKPHNIHKIDKNpe-ksKHLETATTKLFGVevdfvnlrsekYTELSRIPKVCFGTPEEDALRRDATLNALF-----YN 182 baker's yeast
15893603  57 -KRKIKVSSIKK----------DSSVYRITVN------------GYCADISKIKGKNINEDLSKRDFTVNAIA-----LD 108 Clostridium acetobu...
15894040   1 ----------------------------------------------MDMEGILKEKNYNFKEIVKEFSIIERL------- 27  Clostridium acetobu...
15895332  71 YYEKFQTSTIYFNNg----VSVDLIRCRKETY------------LKDGMLPIVEPSSIKDDIYRRDFTVNALA-----YD 129 Clostridium acetobu...
10957484   1 -----------------------------------------------------MSALIYLLTRPEPVTFDELS------- 20  Deinococcus radiodu...
19173101  70 TGQKLTDVHVIKDNpe-ksKHLETAVVRINGFcvdfv-nlrneTYSETRIPNVKPGTPQEDAFRRDLTINSLF-----YN 142 Encephalitozoon cun...
19115563 114 QHPDWETKVIKIDAnplksKHLETATARIMGMdidivnlrhhdYTNSNSSNKLVFGTPLEDALRRDATINALF-----YN 188 fission yeast
19075619  87 YKDALGKLTVNPDQs----KHLETATLSLFDLdidfvglraesYDDKSRIPSVTPGTVETDALRRDFTVNTLF-----FN 157 fission yeast
17230628  68 GFVLL----DPv-------RRIARVVFPQATa-----------DFAQQE-----GDSLETDLHRRDFTVNAIAynphtQ- 119 Nostoc sp. PCC 7120
16331730  69 GFVVL----DKa-------RHIARVVFAHGTv-----------DFAQQE-----GMSLEQDLARRDFTVNAIAynfqqN- 120 Synechocystis sp. P...
135969   183 IHKGEVEDFTKrGLQDLKDGVLRTPLPAKQTFLDDPLRVLRLIRFASRFNFTIDPEVMAEMGDPQINVAFnskISRERVG 262 baker's yeast
15893603 109 IKNNKIVDPFD-GRVHIKRRILQVIDEKS--FEDDAVRILRGIRFYIKYGMHFNGYTEEYIRKHSKNIMK---FPRDRVL 182 Clostridium acetobu...
15894040  28 KKVKQNPEYHGeGSVYKHTELVCREILK---LEEWKTLNDREKVVLYTSALFHDIGKLVTTREENGKIIS----PRHALK 100 Clostridium acetobu...
15895332 130 IVDERIIDFYG-GIDDINNKVIKSIHKNS--YSEDCTRIFRAIKYSIRYGFEIEDDFVFNSLIGNNIFNT---ISFERYI 203 Clostridium acetobu...
10957484  21 AELRPVLPLLG-ELPHTPQDPEWHAEGD--VATHSALVLARAHELSEGLDPFDRAALLLAAALHDIGKAL----T-TREE 92  Deinococcus radiodu...
19173101 143 LFTEEIEDYTGrGLEDIGRKVLATPLDPRTTLLDDPLRLVRIFRFHSKLGFTIDKKIDEALEDKRVKVALakkVSNERIH 222 Encephalitozoon cun...
19115563 189 LKSKTVEDFTGkGLVDLSNKIIRTPLVADETFGDDPLRAVRCIRFATKYDFNIHEETIKGLKNPELHERLrssISRERIG 268 fission yeast
19075619 158 IRTEKIEDITKrGYKDLQTKVLVTPISPLQSFLEDPLRILRGIRFASRFEFTIDPSVVSAIQDPKVCKAFekkVSKERVG 237 fission yeast
17230628 120 ----EIIDPLN-GYADLQAGVLRMIAKAN--LKDDPLRLLRAYRQAAQLGFTIEPTTQAAIRDLASHLCQ---VAAERVR 189 Nostoc sp. PCC 7120
16331730 121 ----KLIDPMA-GVGDLQRGQLKMVAAVN--LADDPLRLLRAYRQAAQLQFTLDPDTRTVLRELAPRIKT---VAAERVQ 190 Synechocystis sp. P...
135969   263 VEMEKILVGPTPLLALQLIQRAHLENVIFFWHNDssvvkfneencqdmdkinhvyndnilnshlksfielYPMFLEKLPI 342 baker's yeast
15893603 183 DEIIHIIHEDENGVFFEVMDQYMILKNILPYMEElktvgkckhhlvdaf-------thmntayhvfkdmkKKYLKVKNIN 255 Clostridium acetobu...
15894040 101 GAKMFRYLAYTRYEIENSIREESAALIRYHGLP--------------------------------------------LYF 136 Clostridium acetobu...
15895332 204 KELYLICGEDKWIQMLKKCCMYGIIDLDCDMLGD----------------------------------------S-IQFS 242 Clostridium acetobu...
10957484  93 PEGSSGQIRLRSRQHARRGRDYLAYRLLDTGLAP-------------------------------------------RLI 129 Deinococcus radiodu...
19173101 223 IEIFKILRYPRGQYGLLEIVRRDYVEPIFKPPVEs-----------------------------------RTSYEKGLVF 267 Encephalitozoon cun...
19115563 269 VEVDKMLKHCNTNRALKIIHSLGMFACIFGPLEIhtkklqskn-------------------ieslslipYAIDLFGYLQ 329 fission yeast
19075619 238 EEIEKMLKGANAKLALQLLYSTNTYQFTFDTLPAekefqip-----------------------kaleatESLFQSLALT 294 fission yeast
17230628 190 VEIGYLLASPQGHTWMAIAENDGLLKQFFPnt-------------------------------------tPESFRKLAVV 232 Nostoc sp. PCC 7120
16331730 191 AEFNYLLGSPRGSQWLLAAWQDGILAHWFSha-------------------------------------nLSSLNAIGCI 233 Synechocystis sp. P...
135969   343 LREKIGRSPGFQQNFILSAILSPManlqiignpKKKINNLVSVTESIVKEGLKLSkNDAAVIAKTVDSICSYEEILAKFA 422 baker's yeast
15893603 256 IEEFNKDIGVYNELDYLAFAIFTHdigkyvsykKEGQKISFKGHDEKGLEIIEKVcDELKFPNDGKKIVCSVVKNHMYPL 335 Clostridium acetobu...
15894040 137 LERENMDYDIIKAAEITNMKLLY-----------LLAKCDLLGRFCKDKEIMLD---NIGYFKTYSKELGCFYGRKKFKN 202 Clostridium acetobu...
15895332 243 EQNINFLNMVYCSRDKILNRALVEn---------SFLKKELLNPIRKFIVGRKE----LEHKLLNSKRNYDIYKVFNGMT 309 Clostridium acetobu...
10957484 130 LTVLELVAHHHSLHRAAESELGRG---------VFALARQVPLPLLVRLAKADARgREVRGGDGRKGEDTADYLELLARD 200 Deinococcus radiodu...
19173101 268 CEVVEKITNLWGRPYRREVLNLYTv-------lCFFSRLTVPGGRDSVFSNTYIVkTSLPSSKSFVKMINKIEESLVFLD 340 Encephalitozoon cun...
19115563 330 KKDVSIKNLSSSSKYIFWLAIATLpwynwsileKSKIKILPPILIRDSLKYSKPImSQVENFFVHYPLIMSKINVLEKEG 409 fission yeast
19075619 295 FPKLMKLSEDEKIGLWLYVALIPWss-----qtVMVKKKQFYIPAIIAKDKLKLR-STYVNQLNQCCTFNPIFDELVNDT 368 fission yeast
17230628 233 DEVADLLAKQWPQLGVELQGYVREtvk-----ttWLSIAKLACLVHPDPSVAEIElQKLTYSRAEIRAVTTAVKLFPQLK 307 Nostoc sp. PCC 7120
16331730 234 DLAIAAIKNQL--TLVERQQFFQAlg------kkGIAIAKLASLVCADVKIAEGElQRLKYSRHELRSVQAILQGYPQLS 305 Synechocystis sp. P...
135969   423 drSQLKKSEIGIFLRNFNGEWETAHFASLSDaflkipkleTKKIELLFQNYNEFYSYIFDNNLNN--CHELKPIVDGKQM 500 baker's yeast
15893603 336 mlFKLKEDERKQEEYEFFNKFDQYVPHIIVAsfcd--vyaTTIYIDENNEKDRFTSFISELVVKYreFINLKKIKYIDGN 413 Clostridium acetobu...
15894040 203 ----EYTRFLYFKEKKIHPEAEMFDNRGFGvvammglplagkdtyikenfkninvislddireelnisskrnsgkvaaia 278 Clostridium acetobu...
15895332 310 ----KYELVLFSWNKELKYKVYNYTKN----------------ILNFKTVISGKEIKNLIERDGK--IVGLIKEGILKRN 367 Clostridium acetobu...
10957484 201 ----LGVWNVTDPYAAFRAEIAALLPGAP-------------PELLALAVGRGIQDWEAGVIHTP-----HEAVARVQEA 258 Deinococcus radiodu...
19173101 341 g-CDMKKPKNEDLIRMVRFMGETWYESLVIYsaiehmrggHEKYENGLRVIYSIIQQEIGECYLSrpIIDTSRLAKTLEI 419 Encephalitozoon cun...
19115563 410 klTRLGCGRLVRELGPHWRDIIDWAFFMNTLisn----sdIQRLNKDEEVTWFHVLVKHIEEYGMeeAYNIQPIINGNEI 485 fission yeast
19075619 369 --STKNCSSIGSLIRQLNKSWEVVFLTSVIYscc---ktpAASVSNTFSSYKSLYDFIYDKNLQN--AYNMKPLLDGKQI 441 fission yeast
17230628 308 --TAN----TLREQYFVFQEAGMVFAAIAVLalvq---dilvEAMSGDNRLSAYSPLITRYLNPDdlVAHPTQLVSGKNL 378 Nostoc sp. PCC 7120
16331730 306 --CLENS-PTVRQLYFFFVELGKYLPHFVLYa----------lAHCPHNYHSFIFELLTHYLNSGdrLAHPQPLITGKDL 372 Synechocystis sp. P...
135969   501 AKLLQMKPGPWLGKINNEAIRWQFDNPTGTDQ 532 baker's yeast
15893603 414 DLIDMGFRGNDIGNILNELNKMLYIEGSKTKK 445 Clostridium acetobutylicum
15894040 279 israkqllrrkesfiwnatnlrrenrqklirl 310 Clostridium acetobutylicum
15895332 368 VNMLMNFDYSTKNMGEILYDIEHKYR------ 393 Clostridium acetobutylicum
10957484 259 ARSGFPrltvlcgpsgsgkstyahsvpdadli 290 Deinococcus radiodurans
19173101 420 PKPDIRFYIEESIVYQLLSGTESPEEIVDHLR 451 Encephalitozoon cuniculi
19115563 486 TRILGIRPGPHLRKMLDDSIEWRIQNPESTKE 517 fission yeast
19075619 442 MKNVGVKPGPQLKETMDNMISWQFKHPEGSVE 473 fission yeast
17230628 379 MIALDLPPSPLVGELLTEIAIARIEGKVTTTE 410 Nostoc sp. PCC 7120
16331730 373 IDKLHIKPSPLIGQLLTEINIAHIEGKISNEQ 404 Synechocystis sp. PCC 6803
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