1B8A,1EOV


Conserved Protein Domain Family
AsxRS_core

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cd00776: AsxRS_core 
Click on image for an interactive view with Cn3D
Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Statistics
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PSSM-Id: 238399
Aligned: 36 rows
Threshold Bit Score: 374.981
Created: 24-Sep-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1B8A_A T. kodakaraensis aspRS bound to ATP using 3.5A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                       
1B8A_A      114 KAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIAtate------------------ggtEL 175 Thermococcus kod...
Q9HKS7      107 DQGEEFLLDNRHLWLRSREFTSVLKIRSTIFRSFADFFYENGYYQVQTPFMVStave------------------ggsTL 168 Thermoplasma aci...
O57980      112 QASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTgave------------------ggaTL 173 Pyrococcus horik...
ZP_00019239 111 EHGVEFLMAHRHLWVRSAKQHAILRIRAEVIAAAQEWLNEQGFVRFDTPILTAtaae-----------------gttnLF 173 Chloroflexus aur...
Q19722      219 SAGVDVMLDNRHLVIRGENASRILRIRAAATRAMRDHFFAAGYTEVAPPTLVQtqve------------------ggsTL 280 Caenorhabditis e...
P25345      131 YQTLRYLRSLPTLKYRTAYLSAILRLRSFVEFQFMLYFQKNHFTKVSPPILTSndcegage---------lfqvstntSP 201 baker's yeast
XP_327152   169 YQTPEYLRTIPHLRPRTPINAALLRMRSEAVAALTRFFAENHFTQTHPPILTSsdcegagevftvapasnvtelssteDN 248 Neurospora crassa
NP_595125   242 EAEPSYLLDQRHLVIRGETASSVLKVRARALRAMRDTFENLKMTEVTPPCMVQtqve------------------ggaTL 303 fission yeast
P38707      228 GSDPSLLLDQRHLALRGDALSAVMKVRAALLKSVRRVYDEEHLTEVTPPCMVQtqve------------------ggsTL 289 baker's yeast
NP_595079   113 HLTTEMLRQIPHLRLRTAKQGEIFRLRSDSLKALRQFFSSKDFTETNPPIITSsdcegagevftl-tpqethknksfeRD 191 fission yeast
Feature 1                                             # #     ##                                
1B8A_A      176 FPMKYFEEDAFLAESPQLYKEIMMASgLDRVYEIAPIFRAEeHNTTRHLNEAWSIDSEMAFiedEEEVMSFLERLVAHAI 255 Thermococcus kod...
Q9HKS7      169 FKVDFFGEPIYLNQSAQFYLETMIYS-LEKVFTIAPSFRAEkSRTRRHLTEYWHAEAEVAWi-dNNEMMDIEERMIYYIV 246 Thermoplasma aci...
O57980      174 FKLKYFDKYAYLSQSAQLYLEAAIFG-LEKVWSLTPSFRAEkSRTRRHLTEFWHLELEAAWm-dLWDIMKVEEELVSYMV 251 Pyrococcus horik...
ZP_00019239 174 ATDYFDLGKAYLAQTGQLYVEAGMMA-FGKVYCFGPTFRAEkSKTRRHLTEFWMIEPEVAFa-dHEDNMRLQEEFVSAIV 251 Chloroflexus aur...
Q19722      281 FGLDYYGEPAYLTQSSQLYLETCNAA-LGDVYCISQSYRAEkSRTRRHLSEYQHVEAECAFi-tFDQLMDRIEALVCDTV 358 Caenorhabditis e...
P25345      202 TASSYFGKPTYLTVSTQLHLEILALS-LSRCWTLSPCFRAEkSDTPRHLSEFWMLEVEMCFvnsVNELTSFVETTIKHII 280 baker's yeast
XP_327152   249 KSKMFFRNKKYLTVSTQLHLEALAQS-VGNVWTLSPVFRAEkSDTARHLSEFYMLEAEMNFvndLDEVMDLAEDMIRNMC 327 Neurospora crassa
NP_595125   304 FKFNYYGQDAYLTQSSQLYLEAALPA-LGSVYTIQESFRAEkSLTRRHLSEFTHVEFELPFv-nFGEFLEIIEEFICQTI 381 fission yeast
P38707      290 FKMNYYGEEAYLTQSSQLYLETCLAS-LGDVYTIQESFRAEkSHTRRHLSEYTHIEAELAFl-tFDDLLQHIETLIVKSV 367 baker's yeast
NP_595079   192 DQKHFFDRPAFLTVSTQLHLEALALG-LSRVYTISPAFRAEqSHTSRHLAEFWMLEAEVAFmtsLSQLTSLMEDMIKYTL 270 fission yeast
Feature 1                                                                                       
1B8A_A      256 NYVrehnakeldi-----------------------lnfeleepkLPFPRVSYDKALEILGdlgk-------eipWGEDI 305 Thermococcus kod...
Q9HKS7      247 SRVtednedelkml--------------------nrdpevlkamkPPFPRIRYSEIIKVANsigl-------plkYGDDL 299 Thermoplasma aci...
O57980      252 QRTlelrkkeiemf--------------------rddlttlkntePPFPRISYDEAIDILQskgv-------nveWGDDL 304 Pyrococcus horik...
ZP_00019239 252 ARVlerrrddlqtl--------------------erdttlleqvrPPFPRITYDEAIELIAahqgeve-gadplpWGEDF 310 Chloroflexus aur...
Q19722      359 DRLladpvtkslie---------------------fvnpgykapaRPFKRMPYKEAIEWLQkndvrne-mgekfvYGEDI 416 Caenorhabditis e...
P25345      281 KACidnqqellpkqfissqennasselsinqetqqiktrwedlinEKWHNITYTNAIEILKkrhnevshfkyepkWGQPL 360 baker's yeast
XP_327152   328 ITMyesptvyeflnregrvgs-------dlvspeevkarwegmmaDEWPRITYTDAIEFLQehadef---ehkpvWTEGL 397 Neurospora crassa
NP_595125   382 DRLlddpiatplik---------------------qlnpdfvkpsRPFMRLSYEDAIKYLNehniltp-egeqhkFGDDI 439 fission yeast
P38707      368 QYVledpiagplvk---------------------qlnpnfkapkAPFMRLQYKDAITWLNehdikne-egedfkFGDDI 425 baker's yeast
NP_595079   271 NSLmeqnyhr----------------------------dhwdqllKPWKCMTYSEAIEELSavkktw---kyppkWGNDL 319 fission yeast
Feature 1                                                                       #  #            
1B8A_A      306 DTEGERLLGKYmmenenaPLYFLYQYPSeaKPFYIMKYDNkp-------eICRAFDLEYRG--VEISSGGQREHRHDILV 376 Thermococcus kod...
Q9HKS7      300 GADEERQITMKy-----dRPIFVTNYPKd-LKPFYMPVDPen------pgEVLNHDMLAPEgyGEIIGGSQRIWNYDELM 367 Thermoplasma aci...
O57980      305 GADEERVLTEEf-----dRPFFVYGYPKh-IKAFYMKEDPnd------prKVLASDMLAPEgyGEIIGGSQREDDYDKLL 372 Pyrococcus horik...
ZP_00019239 311 GAPHETLIASKf-----dRPVFVERFPSa-VKAFYMQPDPer------peVALCADLLAPEgyGEIIGGSQRIHDPILLE 378 Chloroflexus aur...
Q19722      417 AEAAERRMTDTi-----gVPILLNRFPHg-IKAFYMPRCAdd------neLTESVDLLMPGv-GEIVGGSMRIWKEDQLL 483 Caenorhabditis e...
P25345      361 QTEHEKFLAGEyf----kSPVFVTDYPRl-CKPFYMKQNStp------ddTVGCFDLLVPGm-GEIIGGSLREDDYDKLC 428 baker's yeast
XP_327152   398 HSEHEKFIAEHvg---dgKPVFVTDYPRd-IKAFYMREGQslpdisspgpTVECFDLLVPDl-CEIAGGSMREHRLEPLL 472 Neurospora crassa
NP_595125   440 AEAAERKMTDQi-----nRPIFLTYFPLe-IKSFYMKRVVdr------peLTESVDCLMPNv-GEIVGGSMRISDIQELL 506 fission yeast
P38707      426 AEAAERKMTDTi-----gVPIFLTRFPVe-IKSFYMKRCSdd------prVTESVDVLMPNv-GEITGGSMRIDDMDELM 492 baker's yeast
NP_595079   320 SSEHEKYLCEIlh----kTPVFVTDYPQk-IKPFYMKSSGp--------dTVAAVDLLVPQv-GELAGGSLRKDHLDEYK 385 fission yeast
Feature 1                                                        #  #                      
1B8A_A      377 EQIKEKglnpe-----------------sfefyLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRR 434 Thermococcus kodakara...
Q9HKS7      368 QRIREAnldes-----------------ayywyVDLRKYGSVPHSGFGLGLDRLAMWIMHLDNIREAIPYPRTIR 425 Thermoplasma acidophilum
O57980      373 NRILEEgmdpk-----------------dyewyLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPA 430 Pyrococcus horikoshii
ZP_00019239 379 QRIREHglrie-----------------dyewyLDLRRYGTVPHSGFGMGIERVVAWITGTRHIRETIPFPRQLY 436 Chloroflexus aurantiacus
Q19722      484 AAFEKGgldsk-----------------nyywyMDQRKYGSVPHGGYGLGLERFICWLTDTNHIRDVCLYPRFVG 541 Caenorhabditis elegans
P25345      429 REMKARgmnrsg----------------eldwyVSLRKEGSAPHGGFGLGFERFISYLYGNHNIKDAIPFYRTSA 487 baker's yeast
XP_327152   473 EAMKRHnivageftssmdgnapagaktgpldwyVDLRRWGCAPHGGYGIGFDRLLCYLTGVQTIRDMVSFPRWFG 547 Neurospora crassa
NP_595125   507 AAYKREgidpa-----------------pyywfTEQRKYGTTEHGGCGLGLERFLAWLCDRYTVRECCLFPRFTE 564 fission yeast
P38707      493 AGFKREgidtd-----------------ayywfIDQRKYGTCPHGGYGIGTERILAWLCDRFTVRDCSLYPRFSG 550 baker's yeast
NP_595079   386 TYPPELqw------------------------yLDLMKYSNAPHGGFGLGIERLIAFLEGENTNVKETIPFPRSV 436 fission yeast

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