1MIU,1IYJ


Conserved Protein Domain Family
BRCA2DBD_OB2

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cd04494: BRCA2DBD_OB2 
Click on image for an interactive view with Cn3D
BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA).
Statistics
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PSSM-Id: 239940
Aligned: 10 rows
Threshold Bit Score: 258.919
Created: 23-Aug-2006
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:ssDNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on the binding of human BRCA2 fragment (containing an internal deletion) to oligo(dT)9 (structure 1MJE_A), defined at 3.5A contacts.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           #                                          
1MIU_A     348 PLSSLFSDGGNVGCVDIIVQRVYPLQWVEKTVSGLYIFRs--EREEEKEALRFAEAQQKKLEALFTKVhtefkdheedtt 425  human
1IYJ_B     400 PLSSLFSDGGNVGCVDVIVQRVYPLQWVEKTVSGSYIFRn--EREEEKEALRFAEAQQKKLEALFTKVhtelkeheedia 477  human
NP_989607 2749 PLSSLYSEGGTVGCIDVVVQRTYPIQWMEKTSAGSYVFRn--SRAEEREAAKHAEDQQKKLEALFAKIqaefekheernc 2826 chicken
XP_695134 1899 LLSSLYASGGLVSCVNLLVLRSYPTQWMEKKPNSVFIFRn--DRAEDREARKHSNSKHKSLDLLISKIqtqfekemegkk 1976 zebrafish
CAG09009   337 PVSSLYNSGGPVGCVDIIILRSYPTLWMERKPEGGTVFRs--GRAEEKEARRYNVHKEKAMEILFDKIqaefekeerdnr 414  Tetraodon nigrov...
CAD32571   755 ALNCIKCNGGPVPKTLAGIKRIYPILYKERLGEKKSIVRs--ERIESRIIQLHNQRRSALVEGIMCEYqrgingvh---- 828  thale cress
BAD68109   540 AFKCIKASGGRVPRTLVGVTRIYPVMYRERFSDGRFVVRs--ERMERKALQLYHQRVSKIAEDIQSEHgehcd------- 610  Japanese rice
XP_789722  248 PMTSLHPEGGTIGCLDVLILRTYPMQFMEKLPEGGSVFRn--AKEEAKAAALHASRKQNKMEQLFTQIqkqfeakqatkg 325  purple urchin
EAT37937   767 SANDVLDRGGLIVSLEVIILRVYPLMFVDKTQRDALGSVlrsERVERRRTLESDSNRFESFQALFSQIqkdvqaekvqpn 846  yellow fever mos...
EAU77680   222 GCNTIHDRGGLIARVRALIVRVYPLMYVEKSSSEGQGSVlrsERMQQRHSRRNDASQLENLHKLYNRVqeeiereraan- 300  Anopheles gambia...
Feature 1                                                                                      
1MIU_A     426 qrc------vlsrtltrqqvhalQDGAELYAAVQyasdPDHLEACFSEEQLRALNNYRQMlndkkqARIQSEFRKALESA 499  human
1IYJ_B     478 qrr------vlsraltrqqvhalQDGAELYAAVQdasdPEHLETCFSEEQLRALNNYRQMlsdkkqARIQSEFRKALEAA 551  human
NP_989607 2827 rra------prsrivtrqqihnlQDGAELYEAIQnaadPSYMEGYLSEDQLKALNAHKQLmndkkqTRIREEFKKAVESA 2900 chicken
XP_695134 1977 kkr------aqrrtfsrheietlQDGDELYEAMEq---DAAVETRLSHKQMEAVSKYRCCreekrqAELQERVQKAVMEA 2047 zebrafish
CAG09009   415 kpr------srrrtigdqdikslQDGEELYEAVGd--dPAYLEAHLTEQQAETLQNYKRLliekkqAELQDRYRRAVETA 486  Tetraodon nigrov...
CAD32571   829 ----------------sqndtdsEEGAKIFKLLEtaaePEFLMAEMSPEQLRSFTTYKAKf----eAAQQMRKEKSVAET 888  thale cress
BAD68109   611 ------------------ntddnDEGAKICKMLEraaePEILMSSMSSEQLLSFSYYQEKq----kIVRQNEVAKKVENA 668  Japanese rice
XP_789722  326 qggkrrrslpssrsrnpveveklQSGEELFEAMEaaidPAAFESVLSERQCSTLHAYRRLqnevkqADLQAAFNRSLAQQ 405  purple urchin
EAT37937   847 ------------grrliskltraTTTAELVELMEagldVSCLEIELTSTQREAIMDHQRRkq---eECIQEVNRRIKERM 911  yellow fever mos...
EAU77680   301 ------------svkrnvrvtesTTATELQECLEngldVSFLYFELTRSQQLVIEQFQQRq----qEQLQSEINRRVKAL 364  Anopheles gambia...
Feature 1                      #                      # ##                                  # #
1MIU_A     500 EKEEGl--SRDVTTVWKLRVTSYk-------kKEKSALLSIWRPSSDLSSLLteGKRYRIYHLAVSKSKskferPSIQLT 570  human
1IYJ_B     552 EKEEGl--SRDVSTVWKLRVTSYk-------kREKSALLSIWRPSSDLPSLLteGQRYRIYHLSVSKSKnkfewPSIQLT 622  human
NP_989607 2901 EQEKHgfsKRDVSTVWKLFVVDYrk-----qeKHRGVILSIWRPLLDVCSLLkeGSRYRICQLSTSQSKgrsdsTNVQLS 2975 chicken
XP_695134 2048 QEAEGgcpNRDVTPVWKLSVMDAsd------mQSNLYTLNIWRPTRELQGLLteGHRYRAYHLASSEGKkrsgvAHIQLT 2121 zebrafish
CAG09009   487 EDGTGscpKRDVAPVWRLSIADFme------kPGSVYQLNIWRPPSELQSLLkeGCRYKVYNLTTTDSKkqggnTTVQLS 560  Tetraodon nigrov...
CAD32571   889 LEDAGl-gERNVTPFMRIRLVGLtslsyegehNPKEGIVTIWDPTERQRTELteGKIYMMKGLVPINSDs----EILYLH 963  thale cress
BAD68109   669 LKVAGl-sSRDVTPFLKVRVTGLiskhsatksGCREGLITIWNPTEKQKSDLveGQIYSVTGLLASSYFt----EVSYLS 743  Japanese rice
XP_789722  406 NKEGKf--ERTVVPLMKVRVGDYnas---tskGQQTTFLTLWRPPDDLVTELveGKRFRISSVATSAGRnmpgmCPVQLA 480  purple urchin
EAT37937   912 SSGES---KRKVSSLLKMRITDAr-------kPEKVLLLSIWRPPEELCDLFqeTKVLEIRNVTANGTRn----GEVQLT 977  yellow fever mos...
EAU77680   365 LAKSTi--RPTVTALLKVRLMDRa-------qPVRSFVLSIWRPTDDVRGLLq-EQAYVEFGNVTANGKk---nNDVQLT 431  Anopheles gambia...
Feature 1                                                
1MIU_A     571 ATk-RTQYQQ----LPVSSETLLQv-----------YQPRES 596  human
1IYJ_B     623 ATk-RTQYQQ----LPVSSETLLQl-----------YQPREL 648  human
NP_989607 2976 ATk-KTRYLQ----LSVSQKMLQQi-----------FFPRKA 3001 chicken
XP_695134 2122 ATk-KTLFQD----IERKLRVGIY------------IIVREH 2146 zebrafish
CAG09009   561 GTk-KTQFED----LQASEELLSTy-----------FQPRVS 586  Tetraodon nigroviridis
CAD32571   964 ARgsSSRWQP----LSPKDSENFQp----------fFNPRKP 991  thale cress
BAD68109   744 GRgsSTAWTP----LATAQTTNFEp----------fFTPRKA 771  Japanese rice
XP_789722  481 STr-ATRYEE----LPAASLKLQRs-----------YIPRAA 506  purple urchin
EAT37937   978 AGk-NSSFKP----LDQRQRELPV------------QQMRTL 1002 yellow fever mosquito
EAU77680   432 AHk-ATTYRRvkddLIVEQQGHSSsrtvtpigsidvATFRPP 472  Anopheles gambiae str. PEST

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