3IAY,2P5G,4PTF,4FVM


Conserved Protein Domain Family
DNA_pol_B_exo1

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pfam03104: DNA_pol_B_exo1 (this model, PSSM-Id:281145 is obsolete and has been replaced by 397292)
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DNA polymerase family B, exonuclease domain
This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold.
Statistics
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PSSM-Id: 281145
Aligned: 32 rows
Threshold Bit Score: 133.32
Created: 11-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3IAY_A   76 VTSEGHSVLCNVTGFKNYLY---------VPAP---NSSDA--NDQEQINKFVHYLnetf----dhaIDSIEVVSK---- 133  baker's yeast
P27727  272 EDEEFRSCCVRIQHVHRNVF---------LLPK---EGSTDa-EVVQEINAICRGSg----------IEERRIKFV---- 324  Trypanosoma brucei ...
P33609  373 SVKTHVSCCVMVKNIERTLYflpr--emkFDLN---TGKET--AIPVTMKDVYEEFdskis--akykIMKFKSKIV---- 439  house mouse
P28040  354 ATKQYVSCFLKVDGIMRSLY---------FLPRpssSSVSEd-SIAAQTKDVYDEVanll---skrgVKEWKSRVS---- 416  Schizosaccharomyces...
O31096   33 PESQKIVHWTDNTGHKPYCY---------TRQP------------PSELGELEGREdvl----------gtEQVMR---- 77   Cenarchaeum symbiosum
2P5G_D   19 YIDSNGRERTREVEYKPSLF---------AHCP------------ESQATKYFDIYgkp--------------------- 56   Enterobacteria phag...
P52025   20 GLKKPEINLQKECEFKPYFYvdtsepkeiYDYL---DGLNQeiDLKKLEPEFENNTslkv----qdlITNIEIIEKivys 92   Methanococcus voltae
P21402   23 INRESNVIFIR-FNYYYHYV---------YDAS-----KELe-YKPNECIDLGPFKiin-----------idEKLS---- 71   Fowlpox virus strai...
Q9EMZ8   80 KDYDTEEIIYILFDIYEYFL---------CDYElseSNTKLk-NIKNNIDKYKNSFnssylvledykIITNE-VNI---- 144  Amsacta moorei ento...
Q9YW56   72 KNIDTDELIFFIFDFYHYFL---------CSKElvnNNNDLk-DLINIIDEYKIGEyeil---enlkILDVD-LIP---- 133  Melanoplus sanguini...
3IAY_A  134 ---------QSIWGYSGDTKLp----FWKIYVTYPHMVNKLRTAFERGhlsfnswfsngTTTYD-NIAYTLRLMVDC-GI 198  baker's yeast
P27727  325 ---------ERYYAFEEPGVPreknrWAKLVYPGRYPPFPNKGGLTHV-----------QVVVGaSRSLLELFLIKK-RL 383  Trypanosoma brucei ...
P33609  440 ---------EKNYAFEIPDVPe---kSEYLEVRYSAEVPQLPQNLKge---------tfSHVFGtNTSSLELFLMNR-KI 497  house mouse
P28040  417 ---------KYKYAFELEDVPrt-adYLEVIYSYSYPALPTDLTgs-----------sfSHVFGtNTALFEQFVLSR-RV 474  Schizosaccharomyces...
O31096   78 ---------HDLIADKDVP-------VTKITVADPLAIGGTNSEKSir---------niMDTWEsDIKYYENYLYDK-SL 131  Cenarchaeum symbiosum
2P5G_D   57 -------ctRKLFANXRDASQ-----WIKRXEDIGLEALGXDDFKla----------ylSDTYNyEIKY------DHtKI 108  Enterobacteria phag...
P52025   93 dyilngkdiSEVSDFKNKKERk----ICKVYVKYPNHVKIIREYFke-----------fGKSYEfDIPFLRRYMIDQ-DI 156  Methanococcus voltae
P21402   72 ---------TDIRYVEPRN-------YYTSELVLVKDLKRNR-----------------EKQYLqEYLDITWFYLLN-NI 117  Fowlpox virus strai...
Q9EMZ8  145 ---------QYYYNYTED---------SKITLNNNDLVLFMTPYKie----------kiYSKYNiFINQYRWFYVLN-NI 195  Amsacta moorei ento...
Q9YW56  134 ---------KDYYNFEET----------DINIAKYRNLYLFKTIFki----------qlESEFNhSFLDYRWFYVLN-NI 183  Melanoplus sanguini...
3IAY_A  199 VGMSWITLPkg----kySMIEPNNRVSSCQLEVSINYRNLIAHPAE--------GDws--htAPLRI----MS-FDIECa 259  baker's yeast
P27727  384 MGPSYLEIE--------HLVTAMDRVSHCKTEFLVPSPKDIKVYNS--------SKp----pPPFTV----AS-IQLHA- 437  Trypanosoma brucei ...
P33609  498 KGPCWLEVK--------NPQLLNQPISWCKFEVMALKPDLVNVIKDvs-------------pPPLVV----MS-FSMKT- 550  house mouse
P28040  475 MGPCWLKIQq-------PNFDAVKNASWCRVEIGCSSPQNISVSFE--------KNeitsktPPMTV----MS-LAFRT- 533  Schizosaccharomyces...
O31096  132 VVGRYYSVSggkviphdMPISDEVKLALKSLLWDKVVDEGMADRKEfrefiagwADllnqpiPRIRR----LS-FDIEVd 206  Cenarchaeum symbiosum
2P5G_D  109 RVANF--------------------------DIEVTSPDGFPEPSQ--------AK------HPIDA----IThYDSIDd 144  Enterobacteria phag...
P52025  157 VPSAKYSED--------------NKIDNSIPELNC------------------------------------IA-FDMELy 185  Methanococcus voltae
P21402  118 TPDGCYKID---------------IEHLTPIKKDCYHCDDVSKVFI--------QEi-----PIFEVkftyLL-FDIECq 168  Fowlpox virus strai...
Q9EMZ8  196 EPSGSYRINm-------DNMQKIKTYNKNKTSYYCKNPKLLFSNYV--------KIdk--hiPASRV-----S-IDIECq 252  Amsacta moorei ento...
Q9YW56  184 DPSACYNIDi-------TSDNCKIFVTNIHFKFKTYYVSNPKKLFM--------NKi-----DPLPCkisrLS-FDIECk 242  Melanoplus sanguini...
3IAY_A  260 gr---igvFPEPEY--DPVIQIANVV-SIAG--AKKPFIRnv--------ftLNTCS------------PI-TGS-MIF- 308  baker's yeast
P27727  438 --------QLDSDGvkNEVIAASIAL-YGDVsiDGERKPN------------ITECFtgvrqlspdaplPLdLETyCLSk 496  Trypanosoma brucei ...
P33609  551 --------MQNVQNhqHEIIAMAALVhHSFA--LDKAPPEppfqthfcvvskPKDCIfpcdfkeviskkNM-----KVE- 614  house mouse
P28040  534 --------LINKEQnkQEVVMISARIfENVDi-EKGLPANdmpsysfslirpLKQIFpngfeklarqhkS------SIF- 597  Schizosaccharomyces...
O31096  207 se---egrIPDPKIsdRRVTAVGFAAtDGLKqv-----------------fvLRSGAeeg-------enGVtPGV-EVV- 257  Cenarchaeum symbiosum
2P5G_D  145 rfyvfdllNSPYGNveEWSIEIAAKLqEQGGde-----------------vpSEIID-------------------KIIy 188  Enterobacteria phag...
P52025  186 ck-----kePNAKK--DPIIMVNLFS-KDYQkv-----------------itYKKFE------------NSeYNG-CVD- 226  Methanococcus voltae
P21402  169 fd----kkFPSVFV--NPISHISCWIiDKVTeyk----------------ftLINTDilpdkepsilhhKDfSPKdRI-- 224  Fowlpox virus strai...
Q9EMZ8  253 hf----geFPTANK--FPISHICIDWyMDKN----TNPIKki--------itLINYEiiknyvgekkdkFIyTEVnKLLn 314  Amsacta moorei ento...
Q9YW56  243 qt----gsFPDPKY--MPISHICVECfYD------DPKKNki--------liLTNCNlyeknakknkkvYDmNECeKILn 302  Melanoplus sanguini...
3IAY_A  309 -------SHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPY--LLNRAKALKV----NDFPYFGRL---KTVKQEIKE 372  baker's yeast
P27727  497 rmp-gvhRFINERALLTWFAETLAALDPDIIVGHNIIGYTVET--LLNRYQELNI----VRWSTIGRLdvrRFPRIQGNN 569  Trypanosoma brucei ...
P33609  615 -------IAATERTLIGFFLAKVHKIDPDILVGHNICSFELEV--LLQRINECKV----PYWSKIGRLr-rSNMPKLGSR 680  house mouse
P28040  598 -------CERSEVSLLNNFLNKVRTYDPDVYFGHD---FEMCYsvLLSRLKERKI----HNWSSIGRLrrsEWPRSFNRS 663  Schizosaccharomyces...
O31096  258 -------FYDKEADMIRDALSVIGSY--PFVLTYNGDDFDMPY--MLNRAR--------------------RLGVSDSDI 306  Cenarchaeum symbiosum
2P5G_D  189 ------xPFDNEKELLXEYLNFWQQKTPVILTGWNVESFAIPY--VYNRIKNIFG----ESTAK--RLsphRKTRVKVIE 254  Enterobacteria phag...
P52025  227 -------YVKDEKELIQKTIEILKQY--DVIYTYNGDNFDFPY--LKKRAN-IYE----IELDFDNASnsqQPQIIKISK 290  Methanococcus voltae
P21402  225 -------TYCTEIVMLL-IMKKILEHRFDFVITFNGNNFDIRY--ISGRLEILEKsfiyFSLPDATETvklKIFERFVTG 294  Fowlpox virus strai...
Q9EMZ8  315 tnkvyitIYCTEKYMLH-FVLYTLRQDFDYVLTYNGHNFDFTY--IQDRRK---I----NKLKGLCLDnvySTNEIKISK 384  Amsacta moorei ento...
Q9YW56  303 mnssvikIYTSEKNILIIFQCLLF-HEFDYILSFNGHEFDIPY--INTRMDIYNL----LKLRMLN-----PFGFPNLNV 370  Melanoplus sanguini...
3IAY_A  373 SVFSskaygtreTKNVNIDGRLQLDLLQFIQRE------YKLR--SYTLNAV 416  baker's yeast
P27727  570 FNLA--------IEKEACVGRLVVDTYLLAREY------YKST--NYKLLSL 605  Trypanosoma brucei brucei
P33609  681 SGFG---------ERNATCGRMICDVEISAKEL------IHCK--SYHLSEL 715  house mouse
P28040  664 SQQF--------VEKQIIAGRLMCDLSNDFGRS------M-IKaqSWSLSEI 700  Schizosaccharomyces pombe 972h-
O31096  307 PLYMm-------RDSATLRHGVHLDLYRTFSNRsfqlyaFAAKytDYSLNSV 351  Cenarchaeum symbiosum
2P5G_D  255 NXYGs-------REIITLFGISVLDYIDLYKKF------SFTNqpSYSLDYI 293  Enterobacteria phage RB69
P52025  291 GGIN---------RKSKIPGIIHIDLYPIARKL------LNLT--KYKLENV 325  Methanococcus voltae
P21402  295 GTFTnk-----tYHINNNNGVMFFDLYAFIQKT------ERLD--SYKLDSI 333  Fowlpox virus strain NVSL
Q9EMZ8  385 FSYNqd----ttYEIDSTNGIIFLDLYNYIKKT------Y-PSsnSYKLSEI 425  Amsacta moorei entomopoxvirus 'L'
Q9YW56  371 IKGDas----srYTHIEYSSILF-DLYVYTKKT------YVLP--EYKLETV 409  Melanoplus sanguinipes entomopoxvirus
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