Conserved Protein Domain Family
Lin-8

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pfam03353: Lin-8 (this model, PSSM-Id:281363 is obsolete and has been replaced by 397436)
Ras-mediated vulval-induction antagonist
LIN-8 is a nuclear protein, present at the sites of transcriptional repressor complexes, which interacts with LIN-35 Rb. Lin35 Rb is a product of the class B synMuv gene lin-35 which silences genes required for vulval specification through chromatin modification and remodelling. The biological role of the interaction has not yet been determined however predictions have been made. The interaction shows that class A synMuv genes control vulval induction through the transcriptional regulation of gene expression. LIN-8 normally functions as part of a protein complex however when the complex is absent, other family members can partially replace LIN-8 activity.
Statistics
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PSSM-Id: 281363
Aligned: 18 rows
Threshold Bit Score: 236.107
Created: 21-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9N5J4        31 TVQEYMAMLK----SgrkVYEIKPDDRILKKVVMSEIEKIPDMWAgEKNtNRQAEHYATVG------------------- 87  Caenorhabditis ...
Q9TZ87         2 NATDYRKLTEhiegTk------FPMDNLIKKVFLNILEPKEDLWN-SNQ-KIDRERWETVG------------------- 54  Caenorhabditis ...
Q21396        19 SVKEYLELPK----Nn--YLEDATINSYIKKTTLTLLENHQNLWE-YNA-TVVEEKWALLG------------------- 71  Caenorhabditis ...
Q21395        10 TMQKNIELGK----Tk--SGRYSKKRVNVKKALFKIVENYPNIWK-SKS-SGPPDEWRQIV------------------- 62  Caenorhabditis ...
Q17810        35 TMDEYLEKEN----Re--FVVNASKDIAMKKLALTLLELYPEMWK-PGG-PMVAKKWQAFG------------------- 87  Caenorhabditis ...
Q17809        34 TMADYLLLEN----Tk--FHKTATRAPKIKKVLLSLLKDRPEIWD-RKA-QFSAKNWQNLG------------------- 86  Caenorhabditis ...
Q17811        34 TMADYLLLEN----Tk--FHKTATRAPKIKKSASITTERSPRNLG-QKS-TIFGKELAKSGnnckhfiqypnkqiktkll 105 Caenorhabditis ...
O17149        28 SMEEYMGMEL----Ns--VYEEATKDSALKKVVLDLLKDRKAMWA-PAA-KPSEDKWQKLG------------------- 80  Caenorhabditis ...
O17151        27 TLEEYKEREK----Kd--YYRDATKDASVKKVVLSLLKDHPGMWQ-NGN-RFQPEKWRALG------------------- 79  Caenorhabditis ...
XP_003109960  28 TKAIYTEKSK----Kk--ATCDVGKDINLKRVVLVVLEGKPEIWK-HAA-RAEYSAWESVG------------------- 80  Caenorhabditis ...
Q9N5J4        88 --------------AAVYARTGNL------------------------LNMRQLTIIFKFGKDALRNRLRTAIVKQQLSP 129 Caenorhabditis ...
Q9TZ87        55 --------------IELFQRTGIL------------------------VSVDQMRSGFRSIKSNLGQRLHNCVQSG-MSR 95  Caenorhabditis ...
Q21396        72 --------------IEVYEKTGML------------------------VKTDDIWTIYDNIKKVVRKKMRISINKGK-TH 112 Caenorhabditis ...
Q21395        63 --------------MEVFKQTGEI------------------------VRESILRVTLSEAKRYLKVKIVKCIKKK-MDH 103 Caenorhabditis ...
Q17810        88 --------------AEMYRRTGKI------------------------YRCKDLHSVFTLTKSSIKRKLRTCILIKRMHR 129 Caenorhabditis ...
Q17809        87 --------------VEVYERTGYI------------------------VRSNDLHKMLRTAKVVLKNKLRTCIGIKKLDR 128 Caenorhabditis ...
Q17811       106 klksysnkykmfsrKKIYRKFLNIhcfkfhkfeslkagclffytdflhFNSNDLHKMLRTAKVVLKNKLRTCIGIKKLDR 185 Caenorhabditis ...
O17149        81 --------------AEVFSRTGKV------------------------VSVTQLRRMLVSSKHVLKTKMSHCIKVKKMDR 122 Caenorhabditis ...
O17151        80 --------------VDVYQRTGQI------------------------VRVNDMRKMLVMGKSVLKKKIAICIRDKKLDR 121 Caenorhabditis ...
XP_003109960  81 --------------IEVYERTEQI------------------------VSVLSLRRVFTLCKSSVKRKLRISILNQNLDT 122 Caenorhabditis ...
Q9N5J4       130 EKVEEQLWHWSYYGFVRFYRRNLLPWELFLKRQVNQlnpdkkvytdiedddkgeiiagewfdesqirhaaeinemerspe 209 Caenorhabditis ...
Q9TZ87        96 IQTELELQKWELFQDLRFYYDKLYKYR-QLRAERTGnearnse-----------------------------------pv 139 Caenorhabditis ...
Q21396       113 EEMEQFLNEYDYFKYFKYYYNSIPHYEAELRDRTKKrka----------------------------------------- 151 Caenorhabditis ...
Q21395       104 NSMESHLRQWIFFPYFRYYYNTLGKFESEKRSQVSTgssvdsqlvddt-------------------------fgddmem 158 Caenorhabditis ...
Q17810       130 SKTDEEMWKYELYPYFQYYRQSIGQFEAKLRDEPWTgedqaqedddilfd--------------------glfevennfv 189 Caenorhabditis ...
Q17809       129 AATETELWKWEYYPHFIYYRETLGHFEANLRGEPWDgeahiddddddi-------------------------------- 176 Caenorhabditis ...
Q17811       186 AATEVELWKWEFYRHFIYYRETLGHLEAKLRGEPWDgetqndddeddi-------------------------------- 233 Caenorhabditis ...
O17149       123 VSTEAYLQNWEFYRHFRYYRETLGQFEANLRGEQWTgedqpadddddi-------------------------------i 171 Caenorhabditis ...
O17151       122 AATEKDLWYWEYYRHFLYYRETLGQFEANLRGEEWTgedqiqdeddi--------------------------------- 168 Caenorhabditis ...
XP_003109960 123 VQTETAMWSLPYYGEFKYYRETLKNFENKLRDRVFNekfppatddei--------------------------qfigfgs 176 Caenorhabditis ...
Q9N5J4       210 gsegGSVEKEVKVEAPIMVYQDNSTSlsRTKGNRQSSKYYQQDDD-----------------DQPPPLMHPTEEYAKSVV 272 Caenorhabditis ...
Q9TZ87       140 sgedMQSFFEEPDMMSLVEENDSAMKylSSLIPQVSSTSTPTKVK----------------------LENPFLNAFENPM 197 Caenorhabditis ...
Q21396       152 ----------------nkeEPEMEVDipNGERNQVKKQARTRKANrs--------------aRELAQQEEETEDFIEDNA 201 Caenorhabditis ...
Q21395       159 dddcEEGDNDDIVFVEEVIHEQy----lNDCVQEVKPQHTAIALPp---------------sPLLANNRTPSMSHFARFS 219 Caenorhabditis ...
Q17810       190 hnglPAMEEKVRFSANLHTDEQANMF--DTQTENVD-------------------------------------------- 223 Caenorhabditis ...
Q17809       177 --iyegyweadknSSKLTSETQDSVD--ETIVEEVPLEPDTNVFD----------------------REEEVVTFRRPEA 230 Caenorhabditis ...
Q17811       234 ---iyegyweadknSNQTAEPQDSVD--ETIAEEVPREPYTNTFE----------------------REEEVVNIKRPEA 286 Caenorhabditis ...
O17149       172 ydgifevemvDRTREAQPAENQGNQE--EYHVEEVPYAQEEQVYE----------------------------------- 214 Caenorhabditis ...
O17151       169 --iydgmldgdlsNSSHNFAGHGADD--DYQVEEVQYSEAG----------------------------------FRRPE 210 Caenorhabditis ...
XP_003109960 177 leecEDSDDENYEGVPRHAEEETEMD--SSNDFEVGEQSQEHQYQddgvvnyyaqsyrehgmMEEVVNDQPVVGRYEEIG 254 Caenorhabditis ...
Q9N5J4       273 QHRQWIQNLGKPQie---ltP-------RRRNENNLVTSSNLSSRSSPTVATDFAQEMIQ-------------------I 323 Caenorhabditis ...
Q9TZ87       198 NLRHELSQM-----------L-------QASSSSSSIPSPISPPVPNPKAEDEEKPSLKRpresspa------aveterI 253 Caenorhabditis ...
Q21396       202 ANHAVDN-------------L-------PTRARTSETSAVSRSRAREQAPTMERTPMIDQpeiqiigqa-slqgtagdfL 260 Caenorhabditis ...
Q21395       220 EESM----------------A-------REISWEDQAPKGAKENAPSYEATEKFASS----------------------I 254 Caenorhabditis ...
Q17810       224 --------------------N-------MMGAYTDSFSQIRHETSKSPMNAQSINASIEYenvpvrq-----idktadnI 271 Caenorhabditis ...
Q17809       231 FARAVDNHFGPPTeh----lP-------DSSAKIYSTNIKSASCAPESTEPPKSDNSAQH-------------------I 280 Caenorhabditis ...
Q17811       287 FARAVDNDFGPHTqq----lP-------DSSARSYSANIKSDSCALESTEAPKSDNSAQH-------------------I 336 Caenorhabditis ...
O17149       215 -----NQQQNQQTypm--hgG-------SPSSDYSTISAHSLKRRRSTT----VDSTAEQ-------------------I 257 Caenorhabditis ...
O17151       211 SVRGGDSYFGHGPppqmvmgS-------SASNFSSATQSHSRNRKSSSIDHTEVDRSAQH-------------------I 264 Caenorhabditis ...
XP_003109960 255 GSLNAEQDQHHGYe------MeevvndiSVVGRYEEIDGSLNDEQQNQHQRYEYADALYHqdqpgpssrampvdhdalaI 328 Caenorhabditis ...
Q9N5J4       324 TYQATRISREQPECVKLLRKALFDTVLAFDQK--EYKCVADLFRDLADR 370 Caenorhabditis elegans
Q9TZ87       254 SQQIKRIFEQYPEKTNLIRSVLTYTVLAFDEPdaDFSTASEVFGDLAAR 302 Caenorhabditis elegans
Q21396       261 ALQIRNLLQTNPERANLITSTINKTIGVLRAG--NCEDSHDVFEDLLSG 307 Caenorhabditis elegans
Q21395       255 TSQIYRLFEENAEKSKLIKDVLQKTILALDDTnaYHRNSCDVFEELLAV 303 Caenorhabditis elegans
Q17810       272 GDQVKQLFVDHPDRANFFREVLFKTVLELRDP--AFTNAGVFFDEMSSL 318 Caenorhabditis elegans
Q17809       281 GEQVHRLFAQYPERSKLFRETLFKTILALEEP--EYEHAAEVFTDLAQS 327 Caenorhabditis elegans
Q17811       337 GEQVDRLFAQYPERSKLFRETLFKTIIALEEP--EYEHAAEVFTDLAQS 383 Caenorhabditis elegans
O17149       258 GEEIDRLIQLYPQREMLIRQAFFKTIFALEDEtvEFSNLGDLFEDLAEQ 306 Caenorhabditis elegans
O17151       265 AEQAKRLFLQYPEKSNLIRETMFKTILAFDDPsaDYQNVGEIFDDLAAQ 313 Caenorhabditis elegans
XP_003109960 329 RNCMIQLFVNHPDRFEFHKGGIQKILDYLEKE--EYPDAVKTFGDLkym 375 Caenorhabditis remanei
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