Conserved Protein Domain Family
KCNQ_channel

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pfam03520: KCNQ_channel (this model, PSSM-Id:281513 is obsolete and has been replaced by 460954)
KCNQ voltage-gated potassium channel
This family matches to the C-terminal tail of KCNQ type potassium channels.
Statistics
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PSSM-Id: 281513
Aligned: 12 rows
Threshold Bit Score: 324.043
Created: 11-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9JK97       471 VGEAsSPSkvqKSWSFNDRTR-FRASLRLK---PRCSAE---EGPSEEVAEE-KSYQCELTVDDVMPAVKTVIRSVRILK 542  house mouse
Q0P4Q9       374 AAETpSPTkvqKSWSFNDRTR-FRASLRLK---SRPQAD---EGPGDDINDE-KRLPNDLTMEDVMPTIKTLIRAFRILK 445  western clawed...
XP_005997301 399 VNETiSPTkvqKSWSFNDRTR-FRTSLKLK---PRLPIEghaDGHGEDSNDE-KAYHCDLTVEDIMPAVKTLIRSVRILK 473  coelacanth
EAW48782     278 TAEG-SPTkvqKSWSFNDRTR-FRPSLRLKssqPKPVIDadtALGTDDVYDE-KGCQCDVSVEDLTPPLKTVIRAIRIMK 354  human
XP_005000439 432 SLED-SPSkvpKSWSFGDRSR-ARQAFRIKgaaSRQNSEe-aSLPGEDVVEDnKSCNCEFVTEDLTPGLKVSIRAVCVMR 508  domestic guine...
XP_009290288  27 stdgsSPAkvqKSWSFNDRTR-FRPSLRLKs-qSRSTPEgeaNVTVDEAFDE-KGCHCDMSVEDLPSALKTVIRAVRIMK 103  zebrafish
XP_006631269 463 peaT-SPGrvqKSWSFNDRTR-FRTSLRLK---PRPSADv--EAPAEDGAED-KAPHCDVTMEEVIPAVKTLIRAVRILK 534  spotted gar
XP_003449190 436 GAEA-SPSkvtKSSSFTDKNRgAKNAFKARgsiSRKNSEe-aSLPGEEIGDD-KSCHCEFLTQELPPGLKVAIRAICIMS 512  Nile tilapia
XP_003452841 433 siEE-SPSkepKPAGFTNRER-FRTAFRMKantLRQSSEd-aGGVADPALEE-RGFPPDILLEEMIPTLKLVIRAVRIMQ 508  Nile tilapia
EDM16164      59 aiEE-SPSkepKPVGLNNKER-FRTAFRMKayaFWQSSEd--aGTGDPMTED-RGYGNDFLIEDMIPTLKAAIRAVRILQ 133  Norway rat
XP_008116110 466 INEAaSPTkvqKSWSFNDRTR-FRASLRLK---PRIPVEa--DGPVEESSEE-KAYQCDLTFEDIMPAVKTLIRAVRILK 538  green anole
CAG01696     515 GVET-SPYkvaKSWSFNEKNRgAKNSLKARgssSRQNSEe-aSLPGEEVGDD-KSCHCDFLTQELPSSLKVTIRAVCIMK 591  spotted green ...
Q9JK97       543 FLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLGRIKSLQAR---------VDQIVGRGP--GDRKTR-EKGD-------- 602  house mouse
Q0P4Q9       446 FLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLGRIKSLQGR---------VDQIIGRGPvpVEKKPR-DKGE-------- 507  western clawed...
XP_005997301 474 FLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLGRIKSLQIR---------VDQIIGRGPipNDKKTR-EKGE-------- 535  coelacanth
EAW48782     355 FHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTR---------VDQILGKGQitSDKKSR-EKI--------- 415  human
XP_005000439 509 FLVSKRKFKESLRPYDVMDVIEQYSAGHLDMLSRIKSLQSR---------VDQIVGRGPaiTDKD-R-TKGP-------- 569  domestic guine...
XP_009290288 104 FHVAKKKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTR---------VDQILGRGQmpVDKKVR-EKLL-------- 165  zebrafish
XP_006631269 535 FLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLGRIKSLQTR---------VDQIVGRGAiqPDRKVRsEKGE-------- 597  spotted gar
XP_003449190 513 FLVSKRRFKESLRPYDVMDVIEQYSAGHLDMLSRIKNLQTR---------VDQIVGKGP--------------------- 562  Nile tilapia
XP_003452841 509 FLLNKKRFKETLRPYDVKDVIEQYSAGHLDMLCRIKYLQTR---------IDMILAPGPplTPKHKKtQKTPftyppnqs 579  Nile tilapia
EDM16164     134 FRLYKKKFKETLRPYDVKDVIEQYSAGHLDMLSRIKYLQTR---------IDMIFTPGPpsTPKHKKsQKGSaftypsqq 204  Norway rat
XP_008116110 539 FLVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTR---------VDQIVGRGAiaIDKKVR-EKGE-------- 600  green anole
CAG01696     592 FLVSKRKFKESLRPYDVMDVIEQYSAGHLDMLCRIKNLQTRqvhhtatvkVDQIVG-------------KNP-------- 650  spotted green ...
Q9JK97       603 --------K---GPsDTEAVDEISMMGRVVKVEKQVQSIEHKLDLLLGFYSRCLRSGTSASLG 654  house mouse
Q0P4Q9       508 --------KvstMGpEVEAADELSMMGRVVKVERQVQSIEDKLDILLGFYSQCIRKGPASSFT 562  western clawed frog
XP_005997301 536 --------Kv--PP-ELDQMDELSMMGRVVKVEKQVQSIEQKLDLLLDVYSQCLRKGSDSSFT 587  coelacanth
EAW48782     416 ------------TA-EHETTDDLSMLGRVVKVEKQVQSIESKLDCLLDIYQQVLRKGSASALA 465  human
XP_005000439 570 --------A------EAELPEDPSMMGRLGKVEKQVLSMEKKLDFLVNIYMQRMGIPPTETEA 618  domestic guinea pig
XP_009290288 166 -------------S-DGDILEDVSMLGRVCKVERQVQSIESKLDSLLDIYRQVLQKGSSTALT 214  zebrafish
XP_006631269 598 --------Kt--PP-ELDPLDELSMMGRVVKVEKQVQSIEHKLDLLLNFYTQCLKKGSALSLA 649  spotted gar
XP_003449190 563 ------------KG-EGDAVEDQSMMGRLVKVEKQVVCMDRKLDFLVNVYVQRMGIPRSETEA 612  Nile tilapia
XP_003452841 580 prhesyiaK---AT-SMPDAEDQSMMGRFVRVERQVEDMEKKLDFLVDMHIQHTEHLQVDSAG 638  Nile tilapia
EDM16164     205 sprnepyvA---RA-ATSETEDQSMMGKFVKVERQVHDMGKKLDFLVDMHMQHMERLQVHVTE 263  Norway rat
XP_008116110 601 --------K---SSlEMELVDELSMLGRVVKVEKQVQSIEHKLDLLLGVYSQCLRKGSVNSIS 652  green anole
CAG01696     651 --------K------DGEAGDDLSMMGRLVKVEKQVLCMDRKLDFLVNVYVQRMGITHSETEA 699  spotted green pufferfish
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