Conserved Protein Domain Family
BLM_N

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pfam16202: BLM_N (this model, PSSM-Id:292819 is obsolete and has been replaced by 465064)
N-terminal region of Bloom syndrome protein
BLM_N is the very N-terminal region of chordate Bloom syndrome proteins. The exact function is not known.
Statistics
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PSSM-Id: 292819
Aligned: 19 rows
Threshold Bit Score: 313.235
Created: 24-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O88700          1 MAAVPLNNLQEQLQRHSARKLNNQPSLSKPKSLGFTFKKKTSEG-DVSVTSVSVVK-TPALSDKDVNVSEAFSFTE-SP- 76   house mouse
XP_008273542    1 MAAVPQNNLQEQLELHSARKLHNRLNLSKPKSSGFTFKKKASSGnSASVTSVSAAR-TPVLSDKDVNVTEGSSFSE-PQ- 77   rabbit
XP_004852872    1 MAAIPLNNLQEQLERHSARKLNNKSDLSKPKPCGFTFKKKTTSDnDASVTSVSIAK-TPVLSDKDVNVSEVFSFTE-PP- 77   naked mole-rat
XP_012669021    1 MAGLPHNNLQEQLERHSARKLNNKLSFSKPKSLGFTFKKKTPSDnSISLTS---------MSD---NVTEAFSVSE-PP- 66   small-eared g...
XP_008757811   10 MAAVPLNNLQEQLQRHSARKLKNQFSISKPKPSGFTFKKKTPEG------DVSVVR-TPVLSDKDVNMSEALSYTE-PP- 80   Norway rat
ERE79885        6 MAAVPLNNLQEQLQRHSARKLNNKFDLSKPKSSGFTFKKKTSEG-DVSVTSVPVVK-TPALSDKDVIVSEAFPSTEsPL- 82   Chinese hamster
XP_012397779    1 MAIIPQNNLQQQLERHSAKEIQNKLNVLKHKSTGFTFKKKIPS-------SSSVTQ-AFVLSDKDVNITENVPLSK-PL- 70   Tasmanian devil
XP_007479356    1 MAVIPQNNLQQQLERHSAKEIQNKLNVLRPKSTGFTFKKKIPPGn-------SVTH-APVLGDKDVNVTETFPLSK-AF- 70   gray short-ta...
XP_007666291    1 MAALPQNNLQQQLERYSAKETHNKLSLQKPKSTGFTFKKNLSPGsSVSAACLKVPNtTAALRDKDVNSTTASSLG----- 75   platypus
XP_005999763    1 MTAVPQNNLQKQLELHSAKGAQNKLSLSKSKPGGFTFKKKTPPGnNDATTFSEVKL-TNVLKDKDVNIHENISLAK-PLt 78   coelacanth
O88700         77 LHKPK---QQAKIEGFfKHFPGRQQ--SKGTCSEPSL---PATVQtaqDTLCTTP---KTPTAKK-L------PVAVFKK 138  house mouse
XP_008273542   78 ACPAG---PPARINDFfKNAPAGLQ--SRGAGSTPLL---PDVSQtpqEASCTPR---LAPAAKT-P------RDTVFKK 139  rabbit
XP_004852872   78 PHTPS---QQPRINGFfKNAAVGQQ--GQRTGSKLLL---TGLLQipqEALPTTQ---NISAVKK-P------HNAILKK 139  naked mole-rat
XP_012669021   67 SHTTN---QQTKINDFyKNAPAGQQ--TQRVGSKPLL---PDLVQipkEVLCTTP---HTSVIKK-P------SDAAFKK 128  small-eared g...
XP_008757811   81 LHKPK---QQSNIDGFfKNSPGGQQ--SKETCSELSL---PEVVQipqDASCTTP---KTPAVKK-P------HVAIFKK 142  Norway rat
ERE79885       83 LHTPK---QQPGIDGFfKNSLGEQQ--TK--GTKPSQ---LDLVQipqEVLCTAP---KTPAVKK-P------HISVFKK 142  Chinese hamster
XP_012397779   71 PNTKN---QQASITASsEKTSKGQQ--IHKFCSNQIL---SDSSKnthETSCYLQpstNENSVKK-V------LCKDSKK 135  Tasmanian devil
XP_007479356   71 FNAKN---QQTSISDSsEKTSKAQQ--IQKFCSNQIL---LNSSKntqETSKVSQpptKENCVKK-E------LCKDSKI 135  gray short-ta...
XP_007666291   76 ---GN---QQRRIGGFfEKSLKNEE--TQPLGTDRAG---SSSRKtqtAVSRGSQppaKGMTITPdP------PDIVSKR 138  platypus
XP_005999763   79 SSLTKhndQQLKIGHFfEKNCKSQPqvTQMFSGQPFLncsESVRQtskILPVFTR---PEETIKE-PkqpsakPEESSKK 154  coelacanth
O88700        139 LEFSSSADS---LS----------DWAD------MDDFDMSA-S--DAFASLAKNPA-TRVSTAQK------MKKTKRNF 189  house mouse
XP_008273542  140 LDFSSSLDSlgaLN----------GWDD------MDDFDTSGtP--KAFAASPRKPV-ARVSTAQK------SKRAKRNF 194  rabbit
XP_004852872  140 LEFSSSSDSfhtMN----------DWDD------MDDFDTSEtS--KVFATPPKNHL-VRVSTAQK------SKKAKRNF 194  naked mole-rat
XP_012669021  129 LDFSSSSDSfgaID----------NWDD------MDDFDTSGtS--KAFVTPLKNHFlLRVSTAQK------SKKAKRNF 184  small-eared g...
XP_008757811  143 LEFSSSADS---LS----------DWAD------IDDFDVPA-S--DAFVSLTRNPT-TRVSTAKK------LSSSKRNF 193  Norway rat
ERE79885      143 LEFSSSPDS---LN----------DWAD------MDDFDISA-S--DAFVSMSRNPV-IRVSTAQK------PKKSIRNF 193  Chinese hamster
XP_012397779  136 LELNSSFDStslVS----------DWDD------IDDFDTSGnS--KTFTTPSRSNF-AKLNSTQR------SKGDKNNL 190  Tasmanian devil
XP_007479356  136 LETNSSFDSi-lVN----------DWDD------IDDFDTSGnS--KTFTTPSRTHF-TKLNNTQR------SKTDKNNL 189  gray short-ta...
XP_007666291  139 LDFSSALDTilsLD----------DWDD------LDDFDTSGkNcpKAFVTPPSSQA-VKAGRTPV------SSR-KDDA 194  platypus
XP_005999763  155 SELDCSFSTvisIEdwddlddfdtSWKDkkssqtISPPDKVRqA--KHYKSTPSSHQ-SKINLSSGtfndslSTRNSKNV 231  coelacanth
O88700        190 FKPPPRKANAVKTD---LTPPSPECLQVDLT-----------KESEeeeeeeeeaEGAD-------CLSRDVICIDND-- 246  house mouse
XP_008273542  195 CKAQLKKADAAEAD---LTPASAASKPVELA-----------GAGK---------GDCD-------GVGGGVICIDDDdg 244  rabbit
XP_004852872  195 FKAQPHKTNTVKAD---LTPS--ESQPVDLT-----------KEEK---------DDSE-------WLKSGVICIDDD-- 240  naked mole-rat
XP_012669021  185 SKEQLYKTDTVKAG---LTTSSSENKQVDFT-----------KGQK---------DDSE-------RLSSDVICIDDD-- 232  small-eared g...
XP_008757811  194 FKPPPR-ASAVKAD---LTPSSPECLQVDLT-----------KEQE---------EEAD-------CLSRDVICIDTD-- 240  Norway rat
ERE79885      194 FKPPPHKASVVKAG---LTLSSPESSQVDLT-----------KDQK---------DESE-------YLSGDVICIDSD-- 241  Chinese hamster
XP_012397779  191 SKTRARKANGKKVDpelLNFPSGKNKQAELI-----------KKEL---------PESE-------ELSSPMICLDDD-- 241  Tasmanian devil
XP_007479356  190 SKTQ---TSGKKIDpelLNFPSGKSRQVELT-----------RKEL---------PESE-------ELNSPVICLDDY-- 237  gray short-ta...
XP_007666291  195 SNARVSKAKTGKVGvelVEPRPGGGDRVART-----------SDPL---------REPE--------PSGDSVIYADT-- 244  platypus
XP_005999763  232 LSPQKSIQDTMDKDnqvGYANSFEISERSLTcvdlvslnstgKDCN---------DAAEvpaakkkSLSTGSVVIDEE-- 300  coelacanth
O88700        247 SASEELTEKDTQESQSLKAHLGAER-----GDSEKKSHE---------------DEAVFHSVQNTE---YFEHNDNDYDI 303  house mouse
XP_008273542  245 PVSQVLI-LDSQESHSLETHLGGER-----DHPEDKKVL---------------DTVELHSAEEVP---CIELEDDDYDI 300  rabbit
XP_004852872  241 SIPQVHTDEDTQERHSLKIHLGDER-----DNNEKH-NE---------------EDVELLSSEKAT---CVELNDDDY-I 295  naked mole-rat
XP_012669021  233 CISEVRINEDTQESHSLKTHLGDER-----DNSGKKKNL---------------EDTELHSTEKIP---YTKLS-DDYDT 288  small-eared g...
XP_008757811  241 PASEELLEKDVQEGLSLDARLGTER-----VDSAKKSHE---------------DKAAFQSPQNAL---YFEHNDNDYDI 297  Norway rat
ERE79885      242 PGSEELVKKDAQESQSLETELEVER-----DNSEKKNHV---------------GEVKLQSTEKAL---YDDDDDY--DV 296  Chinese hamster
XP_012397779  242 PISEEFKNEDIQEKQALKTQLDDER-----DYSEKKKSP---------------ERVEQHTIDESLganCEEFNEDDFDI 301  Tasmanian devil
XP_007479356  238 V-SEEVRNEDIQESHASKTHLCKER-----DDNEKKKYP---------------NGTEQHAADESLgadFAEFNEDDFDI 296  gray short-ta...
XP_007666291  245 ADSRGIPAEDVQEVRSFEAISHDEReknhtDDREKEQNSeeiefpegeedcchvQESDSGWDEKPL---VGVIEEDDYDV 321  platypus
XP_005999763  301 ------ETNCIKENERRDS----ET-----QNRELKWRE---------------TDGDSNLVHQSNe--NFVFENDDFDI 348  coelacanth
O88700        304 DFVPPSPEE-II--STASSSLKCSSMLKDLDDSDKEKGILSTSEElLSKPEEMTTHKSDAGTSKDCDAQQI 371  house mouse
XP_008273542  301 DFVPPSPEEeVS--SATSSSLKCSSMLKDLDTPHREKDVLSPAQDlLSKPEKLTPQEPDPETTAGCEARPS 369  rabbit
XP_004852872  296 DFVPPSPEEeSI--SASSSSLKCFSALKDLDASDQEEDVLSTSKDlLSKPEKMTTQEPNPEISTDCDARQI 364  naked mole-rat
XP_012669021  289 DFVPPSPEEeSI--STASSSLKCFSMLQDSDNFDREKDVLSISKDtLSKPEKITAQEPNPETSTDYDARQI 357  small-eared galago
XP_008757811  298 DFVPPSPEE-II--STASSSLKCSSMLKDLDDSDKEKDILSTSKD-LSKPEEMTTPKSDLGTNEDCDAQQT 364  Norway rat
ERE79885      297 DFVPPSPEEeII--SAASSSSKCCSMLKDLDDSDKEKDILNTSKDlLSKPEEMPAKEPDPGTNTDCDDKQM 365  Chinese hamster
XP_012397779  302 DFIPPSPEEgVF--S---SSLRYLCTLKEPSICDEGKNATKLSNYfSSESEKTTSPQLLQETSTKYDGKLL 367  Tasmanian devil
XP_007479356  297 DFIPPSPEEeVFspSSCSSSLKYFSTLKESSTCDKEKNGTKLSDDfLSESEKTTSLQPIQETSTKHDGKLL 367  gray short-tailed opossum
XP_007666291  322 DYVPPSPEEeVLssCSSSASLKRISVLKESAIYSGRRTTPDESNv-LSNPKRTTSEERKIETAMERDDKQp 391  platypus
XP_005999763  349 DFIPPSPQDpMS--SPSFIQHK--SNLKQSTCCSEGLLGMTISDPvISEHNQDILRQPPQWSNSNREAEAF 415  coelacanth
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