3LHR,1Y7Q,4BHX


Conserved Protein Domain Family
SCAN
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pfam02023: SCAN (this model, PSSM-Id:307924 is obsolete and has been replaced by 460417)
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SCAN domain
The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several pfam00096 proteins. The domain has been shown to be able to mediate homo- and hetero-oligomerization.
Links
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Statistics
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PSSM-Id: 307924
Aligned: 228 rows
Threshold Bit Score: 77.5142
Created: 14-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3LHR_A          5 PEIFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPE--THTKEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVT 82   human
XP_002408862  107 TEAFRQRFRGDTKKTEQSFTEFAYSLRSNLVEWLKSAevYGDHDRIVECIGLEQLCKCMPETVRFWVQDKVPETTQKAAE 186  black-legged ...
XP_011404865  155 EETYRRRFRLDGRKKEGSNRELAVRLMDWQVKWLKE---CKKVKDVMELVEIEQFLNLLPTEKRLWVAERKPKSCIQAGE 231  Amphimedon qu...
XP_012811412  255 PEVYRKKFRTVQRGPTDSYSDVVSSLRTTFKAWLRGLs-VTTFDCLEDLMIKDQFLHTCPVEVRQFIMDREPKTADQAAE 333  western clawe...
XP_002944080  234 PEVYRRKFRALNREPKDSYSDVVGNLRTTFRQWIKGLs-INTLAELEDLMVKDQFLHICPAEVRQFVVDREPKTAAKAAE 312  western clawe...
XP_011662566  146 EEGCRLKFRHAKIQSGETYIQFASRIEKYFDRWLELSpyDSSIDGMKSLTLQEQVLDTGNRELLMFIKERQPSSLQNLLI 225  purple sea ur...
XP_011667770  152 EEGYRTKFRYAKLHQGETYVQYAHRIEKYLDRWIDLSsyDDNVEGLKSLLIQEQIFNTSSKECLMFVKERHPGKLTEVLT 231  purple sea ur...
XP_005466805  220 PETYRQRFRCLEVF-DESPKELYARLKELYEKWIQPK--NRTIKEVGEIIVLEQFLRMLCPELQVWIKEHNPKSAAEAAT 296  Nile tilapia
XP_013130052   68 PETYKLKFHSLEVKPDENPKELYARLKELYEKWVKPK--GKTVHEVGEILILEQYLRMLSPELQIWIKERNPNSAAAAAE 145  Nile tilapia
XP_011405491   50 EETYRQRFRSAHIKRTETPLEMLTRITDLADKWLVS---CTTRKEVIDCVILEQFVNVLPEEARTCVKEHKPSSSKEAGQ 126  Amphimedon qu...

3LHR_A         83 VLEDLESELDD 93   human
XP_002408862  187 LAEEYLSRRGS 197  black-legged tick
XP_011404865  232 LADEYEQAIRK 242  Amphimedon queenslandica
XP_012811412  334 IADTYAANRms 344  western clawed frog
XP_002944080  313 IADTYAASrip 323  western clawed frog
XP_011662566  226 LADQYRDAHSD 236  purple sea urchin
XP_011667770  232 LADQYHDAHtd 242  purple sea urchin
XP_005466805  297 LADVFVAARSK 307  Nile tilapia
XP_013130052  146 LADVFVAARrk 156  Nile tilapia
XP_011405491  127 LAEDFRQARKD 137  Amphimedon queenslandica
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