Conserved Protein Domain Family
Glyco_hydro_79n

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pfam03662: Glyco_hydro_79n (this model, PSSM-Id:308968 is obsolete and has been replaced by 461010)
Glycosyl hydrolase family 79, N-terminal domain
Family of endo-beta-N-glucuronidase, or heparanase. Heparan sulfate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulfate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular micro-environment. Heparanase degrades HS at specific intra-chain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N-terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity.
Statistics
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PSSM-Id: 308968
Aligned: 41 rows
Threshold Bit Score: 491.704
Created: 15-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8L608        26 RTTLVIDGSRRIAETDENFICATLDWWPPEKCNYDQCPWGYASLINLNLASPLLAKAIQAFRTLRIRIGGSLQDQVIYDV 105 thale cress
Q9FF10        29 RASIVIQGARRVCETDENFVCATLDWWPHDKCNYDQCPWGYSSVINMDLTRPLLTKAIKAFKPLRIRIGGSLQDQVIYDV 108 thale cress
XP_002284470  24 DAIIKVDGATTVAETDANFICATLDWWPHDKCNYNHCPWGYSSVINMDLSHPLFAKAIEAFKHLRIRIGGSLQDQVLYDI 103 wine grape
XP_009397277  23 yVTIIVKGSDIVAETDDSFVCATLDWWPPQKCNYNQCPWGQSSVLNLDLTHPFLSNAIQAFEHLRIRIGGSLQDQVVYGV 102 wild Malaysian ...
ACR10240      24 DVTIVVRGAETIASTSNEFICATIDWWPPEKCNYDQCPWGQASILNLDLTNPLLAKAIQAFSPLRIRLGGSLQDQVVYGT 103 long-grained rice
XP_006837041  34 ETGITVKGDSVIAKNGDNFICATLDWWPETKCNYDQCPWGQASVLNLDLNNSLLAKAIKAFNPLRIRIGGSLQDQVLYDV 113 Amborella trich...
XP_006837042  23 EVLVKVKSVNTIAHTDDNFVCATLDWWPSDKCNYGECPWIEAGILNLDLENPNLGKAIKAFNPLRVRVGGSLQDQVVYHV 102 Amborella trich...
ACV84153      27 EATVIVKGSTKIAETNKNYICATIDWWPPEKCNYNQCPWGQSSILNLDLDHPFLAQAIQAFDNLRIRLGGSLQDRVVYDV 106 long-grained rice
XP_006374165  24 RATISIDGTIAVAVIDDNFICATLDWWPHDKCNYNQCPWSYSSVTNLDLSHPLLAKAIQAFRNLRIRIGGSLQDQVLYDV 103 black cottonwood
XP_006579525  24 HGSILVDGIQAIAETDDNFICATIDWWPHDKCDYNYCPWGDSSAVNLDLSHPFFAKAIQALKPLRIRVGGSLQDQVLYEV 103 soybean
Q8L608       106 GDLKTPCTQFKKTDDGLFGFSEGCLYMKRWDEVNHFFNATGAIVTFGLNALHGRNKL-NGTAWGGDWDHTNTQDFMNYTV 184 thale cress
Q9FF10       109 GNLKTPCRPFQKMNSGLFGFSKGCLHMKRWDELNSFLTATGAVVTFGLNALRGRHKL-RGKAWGGAWDHINTQDFLNYTV 187 thale cress
XP_002284470 104 GSLRSPCHPFRKMNDGLFGFSKGCLRMSRWDELNRLFSQTGVILTFGLNALYGRYQI-RKGAWAGVWDSSNTQNFIKYTI 182 wine grape
XP_009397277 103 PTLGHPCLPFSKMSGGLFGFSEGCLSMSRWDKLNLLFQRTGAIITFGLNALNGRHPV-HNGMWVGNWNSTNARDFIKYTI 181 wild Malaysian ...
ACR10240     104 PNLGSPCTPFSKSSSGLFGFSQGCITMERWDAINKIFMDTGAVVTFGLNALQGRQQM-GRGVWGGAWNSSNAREFMEYTV 182 long-grained rice
XP_006837041 114 GDLKSPCLPFERKSDGLFGFSSGCLSMDRWDELNEFLSRTGAIITFGLNALYGRHHS-STNVWYGPWDSSNARDLMKYTI 192 Amborella trich...
XP_006837042 103 G-KVKKCPHFKIKGDGLFGFSKGCLPMDRWNALHHLLSDNGALVTFGLNALYGRQQHpNKTEWTGPWDSSNARDFINYTI 181 Amborella trich...
ACV84153     107 G-TNSPCTPFTNISNGLFGFSDGCLSMDRWDKLNALFQKTGAIITFGLNALYGRYNV-RRSFWAGKWNSTNAYNFVKYTI 184 long-grained rice
XP_006374165 104 ESLKAPCHPFRKMKGGLFGFSKGCLHMNRWDELNHLFSRTGAIVTFGLNALYGRHQI-RKGVWGGAWDSSNACDFMNYTV 182 black cottonwood
XP_006579525 104 GSLKSPCHPFQKMKGGLFGFSKGCLQMKRWDELNHFFDETGALVTFGLNALHGRHQI-SHTVWGGDWDPSNAKDFINYTI 182 soybean
Q8L608       185 SKGYAIDSWEFGNELSGSGIWASVSVELYGKDLIVLKNVIKNVYKNS-R-TKPLVVAPGGFFEEQWYSELLRLSGPGVLD 262 thale cress
Q9FF10       188 SKGYVIDSWEFGNELSGSGVGASVSAELYGKDLIVLKDVINKVYKNSwL-HKPILVAPGGFYEQQWYTKLLEISGPSVVD 266 thale cress
XP_002284470 183 SKGYQIDSWEFGNELSGSGVGASVNAEQYGKDLINLKAIINKLYNNS-N-VKPLLVAPGGFYEQDWYAKLLQVSGSSTVN 260 wine grape
XP_009397277 182 SRGYPVDSWEFGNELSGSGVSARVSAEQYAKDLIGLKTLLKELYKNS-R-MRPLLVAPGGFFDQKWYTQLLQASGRDVVN 259 wild Malaysian ...
ACR10240     183 SMNYPIDSWEFGNELSGSGIGASVGAEQYGKDIIELKNIISQLYGNS-R--KPLVVAPGGFYDQKWYAQLLDISGPNVLD 259 long-grained rice
XP_006837041 193 AKGYQVDSWEFGNELSGPGVSARVSAKQYGQDLINLKALIDQLYENS-S-SRPLVIAPGGFFYPNWFTELLHTSGPGVLN 270 Amborella trich...
XP_006837042 182 SNAQKIDSWEFGNELSGSGIAASVNPTQYGQDLIDLKKVVTELYNSS-SmPQPKILAPGGFFDRDWFIKLLESSGSGVVD 260 Amborella trich...
ACV84153     185 SKGYPVDSWEYGNELSGHGIGARVDATLYGKDAIELKSIFQQLYKAP-L-SQPSLLAPGGFFDQQWYTQLLQTSGHGVVS 262 long-grained rice
XP_006374165 183 LKGYKIDSWEYGNELSGSGVSASVSAELYGKDLIKLKDVVNNLYKNS-D-LKPSLVAPGGFFDKQWYAKLLQVTGSGIVN 260 black cottonwood
XP_006579525 183 SKGYKIDSWEFGNELSGKGIGARVGAAQYGKDLIKLKEILRTLYKNS-T-FKPSLVAPGGFYNKEWFDKLLQVTGPGIVN 260 soybean
Q8L608       263 VLTHHIYNLGPGNDPKLVNKILDPNYLSGISELFANVNQTIQEHGPWAAAWVGEAGGAFNSGGRQVSETFINSFWYLDQL 342 thale cress
Q9FF10       267 VVTHHIYNLGSGNDPALVKKIMDPSYLSQVSKTFKDVNQTIQEHGPWASPWVGESGGAYNSGGRHVSDTFIDSFWYLDQL 346 thale cress
XP_002284470 261 VVTHHIYNLGAGVDPNLVSKILNPHYLSRVEETFKSLDKTLQTWGPWASAWVGESGGAYNSGGHLVSNTFVNSFWYLDQL 340 wine grape
XP_009397277 260 ALTHHIYNLGPGDDYRIESKILDPQYLSRITDTFRNLQLTIERHGPWSSAWVGEAGGAYNSGSRRVSNKFLDSFWYLDQL 339 wild Malaysian ...
ACR10240     260 AMTHHIYNLGAGNDPQVANRILNPQYLSQSSDTFRDLQMTIQRHGPWSAPWVGEAGGAYNSGSRKVSNTFLNSFWYLDQL 339 long-grained rice
XP_006837041 271 VITHHIYNLGPGSDPNLVNKILNPAHLSQISQTFRDVWLTIKNSGPWATPWVGEAGGAYNSGGRDVSDTFVNSFWYLDQL 350 Amborella trich...
XP_006837042 261 VLTHHIYNLGAGNDPIVPNRMVDPFYLSEIAETYKSIQLTIQDFGPWSAAWVGEAGGAYNSGGPNVSNAFIDSFWYLDQL 340 Amborella trich...
ACV84153     263 ALTHHIYNLGGGNDAHLIRKILDPKYLDRSEDTYRDMQLTLQRHGTWASAWVSESGGVFNNGGELVSNTFINSIWYLDQL 342 long-grained rice
XP_006374165 261 FVTHHIYNLGAGMDPNLVNKILDPHYLSKVSETFSNLSQTIQQNGPWASAWVGESGGAYNSGGRHVSDTFVNSFWYLDQL 340 black cottonwood
XP_006579525 261 VLTHHVYNLGPGSDEHLDRKILDPECLSKVESIFSNLSETIQKYGPWSSAWVGEAGGAFNSGGRSVSNTFVNSFWYLDQL 340 soybean
Q8L608       343 G 343 thale cress
Q9FF10       347 G 347 thale cress
XP_002284470 341 G 341 wine grape
XP_009397277 340 G 340 wild Malaysian banana
ACR10240     340 G 340 long-grained rice
XP_006837041 351 G 351 Amborella trichopoda
XP_006837042 341 G 341 Amborella trichopoda
ACV84153     343 G 343 long-grained rice
XP_006374165 341 G 341 black cottonwood
XP_006579525 341 G 341 soybean
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