Conserved Protein Domain Family
SKA1

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pfam07160: SKA1 (this model, PSSM-Id:311231 is obsolete and has been replaced by 462107)
Spindle and kinetochore-associated protein 1
Spindle and kinetochore-associated protein 1 (SKA1) is a component of the SKA1 complex (consists of Ska1, Ska2, and Ska3/Rama1), a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation.
Statistics
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PSSM-Id: 311231
Aligned: 32 rows
Threshold Bit Score: 197.471
Created: 21-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9CPV1        16 IGNIKKilsirnlg---qdpalktTLSKIGDEIIAVNELLNKFELEIQYQEQTNSSLK-ELCESLreecedVEHLKEHVP 91  house mouse
Q9XWS0        16 FRICRE------------------NIPNFETTISPLLNTMKNIKLLLDDAAFDQQKLEnNCEETC------MNCTKSQLN 71  Caenorhabditis ...
A8WS92        16 FCMYRE------------------NIPNFESTLSSITKSTNSIKILLEDISNVQKVITdPCEQSC------SSCSPNVLN 71  Caenorhabditis ...
XP_006841162  25 VAELQElaigrnv----hiescvsDLSAIDAVMKGLECQMKAIKDRLKEEAEAIPKAKkLIELSLhqq-qkLQHMLTHLP 99  Amborella trich...
XP_005849678  19 IAELREatllrvdd--ttrqlhtqDVEAIEATVRALEHKLRDIKAYVAREAAAIPQVEaVVAACQlqq-hhLHHIAGHLP 95  Chlorella varia...
ESA22987      12 IRELKNcmlfrteg---tceetdeLLRELRDSLSEIETRVSQMLKFLGEEKAAIERTd-EIRAKLqsqhdhLEWISQHLP 87  Rhizophagus irr...
XP_002952784  15 IAELQRlsslrldd--qtkeyyhqDLLGLEANVQALEEQVAALKAFVQSELSVMPKVEaLIEASRiqs-erTNIVAKNLP 91  Volvox carteri ...
XP_006683095  35 IQLLRElvsvhaaatssqptalshILSDLSHQISTLESQAADLQQALDTETTLLGHGRsNILPKLkqqesvLIQMLDKVN 114 Batrachochytriu...
XP_003112267   1 ---mesfmdslnteniekfsmfreNIPNFDATLTPITKSMNNIKVLLEDITNTRKKLVdPCEETC------TSCSIDELY 71  Caenorhabditis ...
XP_009397883  21 IVELQElviarnm----ypstsmpDLSAVDVTLKTMESQIQAIKDRLQEERNAIPKAKkLIDLSQrqq-rkLQHMLAHMP 95  wild Malaysian ...
Q9CPV1        92 PHLPQVTATQSLVHKPEPDP-KESD----------------KAEEP----GL------------------PKKPPReqR- 131 house mouse
Q9XWS0        72 DFLGIKVEASTIVDVKSQLV-PQSKessal-------vetnEPNEQ----GL------------------SSKPKE--N- 118 Caenorhabditis ...
A8WS92        72 KFLGIEEKLVNNVEIPDSVP-QKSTrpc-----------ldDEKEG----SS------------------VVQPPE--S- 114 Caenorhabditis ...
XP_006841162 100 SGLP-PVATTTSGTTKCLQQ-EKLIgip-----------siEPSKFegdiAL------------------RKEKKG--R- 145 Amborella trich...
XP_005849678  96 TYLPSLRSPEVAGVKE-----NSRAapn-----------qaAAADG----GG------------------GGGPKK--R- 134 Chlorella varia...
ESA22987      88 KHLPGNNEYPTFDRTNVYPS-NSKLqeqdtlq--eidlsyiEENPF----YV------------------PQKPTN--Dt 140 Rhizophagus irr...
XP_002952784  92 ARLPRQVACSVQGVSLAPSR-PGAVgag-----------qlDALQT----GSklaaggtaagtgvtvnggEDAGRR--R- 152 Volvox carteri ...
XP_006683095 115 AG---GTHATSTEHTADVSD-TLTFmkvasasdtngepdadPTSHA----PK------------------KEKPSA--K- 165 Batrachochytriu...
XP_003112267  72 KFLGIEVTPVTNQMESCAQSsEKSNttd-----------keEVKNK----DE------------------LSKNVE--K- 115 Caenorhabditis ...
XP_009397883  96 PSMLKNQSRSVQNPSSSLVP-Ddsgpdil------hepchlKEEPV----AM------------------LKGKKG--P- 143 wild Malaysian ...
Q9CPV1       132 -VIKEMQFITMDEFSDVPAYMKS-RLTYCQINDIIKEINKAVVSKYKIMHQPK---ASMSSVKRNLYQRFIN--E---E- 200 house mouse
Q9XWS0       119 -DIRIVPQITDEEFKTIPKYQLG-RLTLEMMNEIVSKMDDFLMKKSKILGKTN---KQLTRSDREVLDNWRE--LemkA- 190 Caenorhabditis ...
A8WS92       115 -GNRHVQLISEQEFKSIPKYQLG-RLTLDNLNEIVGKMDEFLTKKNAILGKTN---KQITRQDREVLDNWRE--LeikA- 186 Caenorhabditis ...
XP_006841162 146 -GPVPRWYITAEELDSLSAYMRG-RLTLDKLNYGVDEMAGYAAANAQLVAAPR---KKLAEDTLEKALELRD--Ia--M- 215 Amborella trich...
XP_005849678 135 -PPAPRRYITADELASVSSYMRG-RLTADRINAALDEMAALAEGNAAMVAAAR---RNRATGPNKKHAMWIA--FnvaP- 206 Chlorella varia...
ESA22987     141 fIALGLSYVTVTEFERVPKYIHNnRISRDKVNEAIDDFNKVVREKYTILKSQQ---SSLSHIMKQKYWEYIE--A---D- 211 Rhizophagus irr...
XP_002952784 153 -KEAPRWYVTEREFEAASSYLRG-RLQTDKVNAALDELAGHALNNSKLIAAVKgggTKLAPADRKRATELLHsvA---M- 226 Volvox carteri ...
XP_006683095 166 -PCRSIRLLTDDEYNHIPQYIVG-RITLEKINQAITDLNLLISDKYKIFKLPQ---QKMSKLQRSIYWEHKQ--L---A- 234 Batrachochytriu...
XP_003112267 116 -EIRIVAQISEQEFKTIPKYQLG-RLTLDNLNEIVGKMDEFLTKKNNILSKTN---RQLTRIDREMLDSWRE--L---Ei 185 Caenorhabditis ...
XP_009397883 144 -SPAPRWYISAEELDSLSSYMRG-RLTLDKVNIAINEIAMYAEANSHLVSCPK---KKLAEDTWEKALELRD--Ia--T- 213 wild Malaysian ...
Q9CPV1       201 --TKDTKGHHFIVEADIK------E---FTALKVDKRFYVIMHILRHCHRLSEVRG 245 house mouse
Q9XWS0       191 --RKRLPTTLFFIETDIR------P---MLQDRLRPSFAKAIPCLRHIRRIREERC 235 Caenorhabditis elegans
A8WS92       187 --KGRLPTTLFFIENDIR------P---LLTERLRLSFAKAIPCLRHIRRVREERC 231 Caenorhabditis briggsae
XP_006841162 216 --SEAVKGKYFFLETDMK------G----PGLKLDNTGKAILTVLRHLGRIHETRI 259 Amborella trichopoda
XP_005849678 207 --HEPLKGRSWVLEADLR------T---GTAVRLDKTGKALLTLLRHLGRLQEVRV 251 Chlorella variabilis
ESA22987     212 --NEETRGKDFITENDLK------TtnqKINFKMDANGRAIISILRHCGKIKEIRG 259 Rhizophagus irregularis DAOM 181602
XP_002952784 227 --KDGIKGHYWFLESDLR------E---GTAIKLDKTGKSMLTLLRHLGRLQEAAI 271 Volvox carteri f. nagariensis
XP_006683095 235 --TAETKSRVFVTEKDLKdksggwT---ESGFKFDAVGRNVVAILRHLGRIKEVRG 285 Batrachochytrium dendrobatidis JAM81
XP_003112267 186 kaKGRLPTTLFFIENDIR------P---LLQERLRPSFAKAIPCLRHIRRVREERC 232 Caenorhabditis remanei
XP_009397883 214 --TEAVKGKHFFLETDIK------G----PGLKLDNTGKAILTVLRHLGRILEARI 257 wild Malaysian banana
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