Conserved Protein Domain Family
Na_trans_cytopl

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pfam11933: Na_trans_cytopl (this model, PSSM-Id:314757 is obsolete and has been replaced by 463401)
Cytoplasmic domain of voltage-gated Na+ ion channel
This is a large cytoplasmic domain towards the start of voltage-dependent sodium ion channel proteins in eukaryotes. It is found closely associated with pfam06512 and pfam00520.
Statistics
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PSSM-Id: 314757
Aligned: 37 rows
Threshold Bit Score: 123.303
Created: 27-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q16Z69        468 NKEKMSIRSEGL--ESVSEI------TRTTAPTATa---AGTAKArKVSA-------------------ASLSLPGSPFN 517  yellow fever ...
XP_010710653  470 KKRNKSLGIEEYeeDQFPKSqltdsqRKL----------------------------------------SLLGLLYGPNT 509  turkey
EFA11577      509 NKEKISIRSEGL--DSVSEQ------RRVP---------TNLSKMrKVSA-------------------ASLSLPGSPFN 552  red flour beetle
KYB29593      456 NKEKISIRSEGL--DSVSEH------RRV----------PNLSKIrKVSA-------------------ASLSLPGSPFN 498  red flour beetle
NP_001188652  504 NKEKMSIRSVEVesESVSVI------QRQPAPTTA----HQATKVrKVST-------------------TSLSLPGSPFN 554  fruit fly
EGI61230      512 NKEKMSIRS--I--ESIGDQ------RHIKQI-NNh---SAANKVrKVSAvpraangqftyayqeslrkASLSLPGSPFN 577  Panamanian le...
XP_011061306  498 yelfvgqekgnddnnkekmsirsiesigdqrhikqinnhSAANKVrKVSAvpraangqftyayqeslrkASLSLPGSPFN 577  Panamanian le...
XP_011266387  501 NKEKMSIRS--I--ESVSDQ------RHLKQINNNh---SAANKVrKVSA-------------------ASLSLPGSPFN 548  Florida carpe...
XP_011135950  497 NKEKMSIRS--I--ESASEQ------RH-KQINNNh---SAANKVrKVSA-------------------ASLSLPGSPFN 543  Jerdon's jump...
XP_016836964  511 NKERMSIRS--V--ESISEH------R-VRISSNNhnvtSTTTKVrKVSTvaragngqftyayqeslkeASLSLPGSPFN 579  jewel wasp
Q16Z69        518 L---RRGSRGShQFTIRnGRGRfvgvpgsdrkplvlstylDAQEHLPYADDSNAVTPMSE-ENGAIIVPVy-yANlGSRH 592  yellow fever ...
XP_010710653  510 NqvkRRLSHGS-VFNFQip-------------------alEVDSKADSADEEPHSTGEKKiQGRSMSVPQ------VGRR 563  turkey
EFA11577      553 L---RRGSRGShQFTLRnNR-Rmvappgdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGVMVLPMy-yTNlGSRH 625  red flour beetle
KYB29593      499 L---RRGSRGShQFTIRnNR-Hmvggpcdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGAMVFPMy-yANlGSRH 571  red flour beetle
NP_001188652  555 I---RRGSRSShKYTIRnGRGRfgipgsdrk-plvlstyqDAQQHLPYADDSNAVTPMSE-ENGAIIVPVy-yGNlGSRH 628  fruit fly
EGI61230      578 L---RRSSRGShQFTIRnGRGRcfppggdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGTIVVPVy-yANlGSRH 651  Panamanian le...
XP_011061306  578 L---RRSSRGShQFTIRnGRGRcfppggdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGTIVVPVy-yANlGSRH 651  Panamanian le...
XP_011266387  549 L---RRSSRGShQFTIRnGRGRcfvppggdrkplvlstylDAQEHLPYADDSNAVTPMSE-ENGTIVVPVy-yANlGSRH 623  Florida carpe...
XP_011135950  544 I---RRSSRGShQFTIRnGRGRfvppggdrk-plvlstylDAQEHLPYADDSNAVTPMSE-ENGTIVVPVyyaANlGSRH 618  Jerdon's jump...
XP_016836964  580 P---RRGSRGShQFTIRnGRGRfagppgsdrkplvlstylDAQEHLPYADDSNAVTPMSE-ENGAIVVPVy-yASlGSRH 654  jewel wasp
Q16Z69        593 SSYTSHQSRISytshG------------Dll---------------------------------------ggMTKESRl- 620  yellow fever ...
XP_010710653  564 SSMPSQKSYGShpatPscmqsskranadDcnglisvmgggngkvhgldtapsegimlppvmedlgkgdlqpaVNDESSmm 643  turkey
EFA11577      626 SSYTSHASRMSytshG------------Dllgglg--------------------------------sngkmMTKESQl- 660  red flour beetle
KYB29593      572 SSYNSHAARMSytshG------------Dllgglv--------------------------------gsgknMTKESQl- 606  red flour beetle
NP_001188652  629 SSYTSHQSRISytshG------------Dllggma-------------------------------vmgvstMTKESKl- 664  fruit fly
EGI61230      652 SSYTSHASRLSytshG------------Dlafsgirg----------------------------idsigkqITKQEQil 691  Panamanian le...
XP_011061306  652 SSYTSHASRLSytshG------------Dlafsgirg----------------------------idsigkqITKQEQil 691  Panamanian le...
XP_011266387  624 SSYTSHASRLSytshG------------Dlafpgirg----------------------------idsigkqLTKQEQil 663  Florida carpe...
XP_011135950  619 SSYTSHASRLSytshA------------Dlafgnirg----------------------------idsigkpITKQEQil 658  Jerdon's jump...
XP_016836964  655 SSYTSHASRLSytshG------------Dll---------------------------------------gnVTKESRl- 682  jewel wasp
Q16Z69        621 RNRSARntnhsivpppnmsgpnmsyvdsnhkgqrdfdmsqdctdeagkiKHNDNPFIE 678  yellow fever mosquito
XP_010710653  644 HLh----------------------------------------------PQLSVEYFN 655  turkey
EFA11577      661 RNRSLRngpaaaplnhkstrg--------------vydgptghiceskvKQIDNPFID 704  red flour beetle
KYB29593      607 RCRSMRnappattnsffeithka---------hrgdydgptgqlcesklKQLDSSFID 655  red flour beetle
NP_001188652  665 RNRNTRnqsvgatnggttcldtnhk-----ldhrdyeiglectdeagkiKHHDNPFIE 717  fruit fly
EGI61230      692 RNRNNKqtpanghvtdanqkn-------------yhfeasdmedpmgknKPQDNPFIE 736  Panamanian leafcutter ant
XP_011061306  692 RNRNNKqtpanghvtdanqkn-------------yhfeasdmedpmgknKPQDNPFIE 736  Panamanian leafcutter ant
XP_011266387  664 RNRTNKqttpanghvtdtnqk-------------syhfetdledpmgktKQQDNPFIE 708  Florida carpenter ant
XP_011135950  659 RNRNNKqttpanghltdsnqk-------------fyhhetdledpmgktKQQDNPFIE 703  Jerdon's jumping ant
XP_016836964  683 RSRSARppsangnhvtenlqk-------------hhyvsegdtddsfskKQQDNPFIE 727  jewel wasp
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