Conserved Protein Domain Family
ApoB100_C
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pfam12491: ApoB100_C (this model, PSSM-Id:315212 is obsolete and has been replaced by 463606)
Apolipoprotein B100 C terminal
This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Links
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Statistics
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PSSM-Id: 315212
Aligned: 17 rows
Threshold Bit Score: 82.4095
Created: 27-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
P11682        291 QVKAKLQEIYGQLSDSQEKLINVAKMLIDLTVEKYSTFMKYIFELLRWFEQATADSI 347  chicken
ETE64141     4167 QVKAKLQESYNHLLDSYETLISETKRLVDLTIEKYTTFFQYLQKLLDWLEKVTADTL 4223 king cobra
XP_008116487 4427 QVKEKLQEAYEHLS--YERFITNTKKLIDLVIENYAAFFQDLQQLLHQFEEAAADTL 4481 green anole
EHB02362     4643 QFISKLQEFLDQFPDYYEKFIAESQRLIDLAIQSYHVILSYITELLKKLQAATASgg 4699 naked mole-rat
XP_003473207 4488 QFTSKLQELSDQFSDYHEKVIALFQGLIDLSIENYHMLLRYITEVLAKLQAATAKgg 4544 domestic guinea pig
EOB06209     4455 QVKAKLQEIYEQLSDSQEKLIGEAKKLIDLTIEKYSALLQYISELLRWLEQVTADSI 4511 mallard
XP_004175032 4489 QLKEKLREIYGQISQSQEKLISEAKRLIDLTIENYSAFLQYLSELLRWLEQVTAESI 4545 zebra finch
XP_014313855 4486 QFKDILQNFSDRLFDYYEKFIAESQILIDLSIQTYHMFLIYITGLLKELQSTTVYDl 4542 little brown bat
XP_011736487 4486 QFRYKLQDFSDQLSDYYEKFIAESKRLIDLSIQNYHTFLIYIMELLKKLQSTTVMNP 4542 pig-tailed macaque
XP_014586433 4482 QFIYKLQDFPDQLSDYYEKFIAESQRLIDLSIQIYHVFVKYIAELLKELQLATVNDM 4538 horse
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