3JB9


Conserved Protein Domain Family
EFTUD2

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pfam16004: EFTUD2 (this model, PSSM-Id:318261 is obsolete and has been replaced by 464968)
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116 kDa U5 small nuclear ribonucleoprotein component N-terminus
Statistics
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PSSM-Id: 318261
Aligned: 154 rows
Threshold Bit Score: 63.8582
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3JB9_B            5 DLYDEFGNYI--------------GpENE--E------------------------------------------------ 20   Schizosacch...
Q5CU80            5 DVYDEFGNYIvkddndsegsadwvGsEET--S------------------------------------------------ 34   Cryptospori...
32_pfamImport     2 ELYDEFGNYI--------------GpEVQ--E------------------------------------------------ 17  
104_pfamImport    2 SLYDEFGNYI--------------GpELP--S------------------------------------------------ 17  
82_pfamImport     2 ELYDEFGNYV--------------GpELD--D------------------------------------------------ 17  
31_pfamImport     2 TLYDEFGNYI--------------GpELG--D------------------------------------------------ 17  
23_pfamImport     2 EIYDEFGNLI--------------GgENDslA------------------------------------------------ 19  
Q59LI8            5 DLYDEFGNYI--------------GdSLDs-S------------------------------------------------ 21   Candida alb...
A0BVQ2            5 NNYDEFGNYI--------------GpEID--S------------------------------------------------ 20   Paramecium ...
XP_002142411      5 EIYDEFGNYI--------------GtESE--Snldleisldededqssdsqknpthdptevddvkminginrivdgmdie 68   Cryptospori...
3JB9_B           21 -DeEElfpqapsptiaqvpsfeeVIPd--------------------------EELedveRaeemalshlepQNAVVLHE 73   Schizosacch...
Q5CU80           35 -DpEDshnnkdgeifdhaqkeesEDSgsdifsenewqkhkgqvkilnkqsikdEDHemtqEtd--------dDNKIVQFE 105  Cryptospori...
32_pfamImport    18 -S-EEevvsvghfvvgadcngveVEEepedn------------------------------------tvhtyENAVTLYE 59  
104_pfamImport   18 -S-DDesssasesdkdvssdygsDADdparavssmtlettpagdnnnnrgtiiHD-----------------EQAIILHE 78  
82_pfamImport    18 -SsDEeessddgggapddasaisDDDlsrdgggrad-------lvahgggegeDELgaapG-----------ARAIVLHE 78  
31_pfamImport    18 -SsDEedsddeeeeeeeegdgdgEGGega----------------------egMEVegavG-----------GDAIVLHE 63  
23_pfamImport    20 -SsSEseienisgekseeesdvaSHN----------------------------------------------ENESPQQN 52  
Q59LI8           22 -DnDDddenqddlfaaaqppsinDNEys-----------------------qdEEEeedaNg----------KSQLV--- 64   Candida alb...
A0BVQ2           21 -EeEDnvqieeeqmaendqehviANRvyi----------------------------------------pnqQVAVILNE 59   Paramecium ...
XP_002142411     69 mD----------------------------------------------------------------------NEAIILHE 78   Cryptospori...
3JB9_B           74 DKQYYPSA-EE------VYGSNVDIMVQEQDTQPLS-QPIIEPIRHKRIAIETTNVP 122  Schizosaccharomyces pombe 972h-
Q5CU80          106 DKEYYPDP-SD------VYGDDVEILVQEEDHQHID-EPLISPLKENKFDLIEKNLK 154  Cryptosporidium parvum
32_pfamImport    60 DKKYYPDA-EE------VF-KGAEVLVQEEDMQDIN-EPIIKPLRQQTFSIMEKTIP 107 
104_pfamImport   79 DKQYYPDA-RQ------VYGNETELLVMEEDAQTIE-TPLVEPVKIKSYSKHMDKIP 127 
82_pfamImport    79 DKVHYPSA-GE------VYGEGVRTAVLDEDAMDLE-EPIVEPIRRSTFSLMRDEN- 126 
31_pfamImport    64 DKKYYPDA-ED------VY-KGAATVTADEDAQGLE-EPIIAPVKTKTFSKLEKELP 111 
23_pfamImport    53 NQQLVPTF-EK------VYGNEVEVLIEQEDAQDIN-VPLVQPEIVKSVKIEETDLP 101 
Q59LI8           65 -KTTTTNSnDTalvktnIDTNQAETIYIQSQTQSLSnQPIIQPNHEKTMKLEYsidn 120  Candida albicans
A0BVQ2           60 DKQYYPDA-QQ------VYGRDVEINVQEEDAQPIT-QPMIAPLKSKEFDIQETQIP 108  Paramecium tetraurelia
XP_002142411     79 HKEYYEDA-DK------IFGKDVEILFEDEDMHHID-TPTIVPLKDNKFDLVEGDIn 127  Cryptosporidium muris RN66
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