1XTI,1XTJ,1XTK,1T6N,5SUQ,5SUP


Conserved Protein Domain Family
DEADc_DDX39

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cd17950: DEADc_DDX39 
Click on image for an interactive view with Cn3D
DEAD-box helicase domain of DEAD box protein 39
DDX39A is involved in pre-mRNA splicing and is required for the export of mRNA out of the nucleus. DDX39B is an essential splicing factor required for association of U2 small nuclear ribonucleoprotein with pre-mRNA, and it also plays an important role in mRNA export from the nucleus to the cytoplasm. Diseases associated with DDX39A (also called UAP56-Related Helicase, 49 kDa) include gastrointestinal stromal tumor and inflammatory bowel disease 6, while diseases associated with DDX39B (also called 56 kDa U2AF65-Associated Protein) include Plasmodium vivax malaria. DDX39 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350708
Aligned: 23 rows
Threshold Bit Score: 344.329
Created: 30-Jan-2014
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingDEAD box
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #                 # ###  #                  #######                          
1XTI_A       7 SSGFRDfllkpELLRAIVdcGFEHPSeVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVt----------gQ 76   human
1XTJ_A       7 SSGFRDfllkpELLRAIVdcGFEHPSeVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVt----------gQ 76   human
BAJ77563    43 ASGFRDfflkpELIRAIGdaGFEHPSeVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLNPDee--------skN 114  Cryptosporidium ...
CAK78733    30 VSQFKNfglkeELLRAVKeaGFEHPTrVQAESLTNALQGEQLICQAKAGTGKTAVFVLTVLNTINTEs----------nK 99   Paramecium tetra...
CBK24040   641 GSGFQSfflkeEIMKAISecGFEHPSeVQSQCIPKALMRGDILCQARSGMGKTCVFVISVLQNIKHSdhvrffpsdahtQ 720  Blastocystis hom...
A1DL85      57 STGFRDfllkgELLRAITdcGFEHPSeVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVp----------gE 126  Neosartorya fisc...
EGG22147    44 SSGFREfllkpELERVIGdcGFEHPSeVQNECIPQAILGHDVICQAKSGMGKTAVFVLSLLQQIDKNp----------sG 113  Dictyostelium fa...
EAN77484    36 LGGFQDfclksELANAIRenGFEHPSeVQHQALPQAMLGADILAQAKSGMGKTAVFVFALLEQVEKPtdg------qrpF 109  Trypanosoma brucei
O13792      50 STGFRDfllkpELLRAITdsGFEHPSeVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVd----------gE 119  Schizosaccharomy...
P0CQ97      58 STGFRDfllkpELLRAISdlGFEHPSeVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVd----------gE 127  Cryptococcus neo...
Feature 1                                                                                      
1XTI_A      77 VSVLVMCHTRELAFQISKEYERFskympnVKVAVFFGGl-sIKKDEEVLKKn--CPHIVVGTPGRILALARNKs-LNLKH 152  human
1XTJ_A      77 VSVLVMCHTRELAFQISKEYERFskympnVKVAVFFGGl-sIKKDEEVLKKn--CPHIVVGTPGRILALARNKs-LNLKH 152  human
BAJ77563   115 VECICIGHTRELAFQVKNEFDRFskylknVKPQVVYGGi-pIQKDIDMLSNs--TPNILIGTPGRIIALIRQKk-LVTEG 190  Cryptosporidium ...
CAK78733   100 VECLVITHTRELAQQARDEFLRLgkfmksIKVECFYGGgepVTVNISTIETv--KPQIVVGTPGRLKDLICEKkaLKVDR 177  Paramecium tetra...
CBK24040   721 TTCVVFSHTREMAIQITREFIRLgkylpdIVIKTVFGGv-pLRKSMADIKS---GCDILVGTAGRIADLVRHKa-LDTSQ 795  Blastocystis hom...
A1DL85     127 CSVLVMCHTRELAYQIKNEYARFskylpdVKTAVFYGGt-pIQKDIEVLSNkesYPNIVVGTPGRLNALVREKk-LSLRN 204  Neosartorya fisc...
EGG22147   114 VVALVLCHTRELAYQICDEFDRFvkympqVKTAVIYGGi-pINTQKELLRDk--QPNIVIGTPGRVLALATDKs-LSLKN 189  Dictyostelium fa...
EAN77484   110 CQAIVIAHARELAYQIEQEFKRFnkylphCTTGVFFGGv-pEDENIKQLKKe--VPAIVVATPGRICSLIERKa-LDVSR 185  Trypanosoma brucei
O13792     120 VSVLVLCHTRELAFQIKNEYARFskylpdVRTAVFYGGi-nIKQDMEAFKDkskSPHIVVATPGRLNALVREKi-LKVNS 197  Schizosaccharomy...
P0CQ97     128 VSIIILCHTRELAYQIKNEFTRFskfmtnVRTGVFYGGt-pISADQEILANkekCPHIVVGTPGRTMALVRDKk-LNASK 205  Cryptococcus neo...
Feature 1            ##                                                                
1XTI_A     153 IKHFILDECDKMLEqLDMRRDVQEIFRMTPhEKQVMMFSATLSKEIRPVCRKFMQ----------DPMEIFV 214  human
1XTJ_A     153 IKHFILDECDKMLEqLDMRRDVQEIFRMTPhEKQVMMFSATLSKEIRPVCRKFMQ----------DPMEIFV 214  human
BAJ77563   191 IAHFVLDECDKCLEsLDMRKDVQEIFMSTPrKKQVMMFSATMTKEIRDVCRKFMQ----------NPVEIFV 252  Cryptosporidium parvum
CAK78733   178 LKYFILDEADTMIEdLNMRKDIQDIFLRTPqDKQFMAFSATFTESSRTSLKKFIAdnkhiyeitiKPEQLFL 249  Paramecium tetraurelia
CBK24040   796 LKFFVVDECDRQIEtLSTRADIQEVFRSAPlDKQVLMFTATLSENAKASCLKYMR----------SPLCIEI 857  Blastocystis hominis
A1DL85     205 VKAFVLDECDKMLDqIDMRRDVQEIFRATPaDKQVMMFSATLSQEIRPICKKFMR----------NPLEVYV 266  Neosartorya fischeri NRR...
EGG22147   190 VKHFVLDECDSLLEaLDMRKDVQKIFKATPaSKQVMMFSATLSESIRSVCKKFMN----------HPFEIYI 251  Dictyostelium fasciculatum
EAN77484   186 VKWFVVDEFDRCLEdVKMRRDVQTAFLKTPkEKQVMMFSATMTEELRNVAKKFMS----------NPTEIYV 247  Trypanosoma brucei
O13792     198 VKHFVLDECDKLLEsVDMRRDIQEVFRATPpQKQVMMFSATLSNEIRPICKKFMQ----------NPLEIYV 259  Schizosaccharomyces pomb...
P0CQ97     206 VKHFVLDECDKMLEqLDMRRDVQEIFRATPhHKQVMMFSATLSKDIRATCKKFMQ----------SPLEIYV 267  Cryptococcus neoformans ...

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