1VCS,2V8S,3ONJ


Conserved Protein Domain Family
V-SNARE
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pfam05008: V-SNARE (this model, PSSM-Id:368237 is obsolete and has been replaced by 461516)
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Vesicle transport v-SNARE protein N-terminus
V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this. This domain is the N-terminal half of the V-Snare proteins.
Links
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Statistics
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PSSM-Id: 368237
Aligned: 78 rows
Threshold Bit Score: 30.2613
Created: 5-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1VCS_A    14 FAVLTAEITSKIARVPRLPP--D--EKKQMVANVEKQLEEARELLEQMDLEVR-EIp----pQSRGMYSNRMRSYKQEMG 84  house mouse
A0C5I0    14 CDEEVTVICKKLQQILTTID--IqeDKNFALKEAQSCIDSANENLKQMEVELQ-GYa----kNIKDNLKQQFILQKRKLD 86  Paramecium tetraurelia
EED87455  14 FLSLTEQVTSKLRSLDPSTSsgLppTAEADIKMAHNLLLQADDLLKQMGLEAR-GVdd---aGVKRDLLGKVRVCKTRLA 89  Thalassiosira pseud...
Q7RGW8    16 YMKTVNYTEKIIKDNN---S-----DQNKLLNIYEKAVNSAESMFKRMQLEVEtNTiisdqqNELNEIQTKITEYKYKLK 87  Plasmodium yoelii y...
Q24E32    37 FNKIVNQIQKMLANVQNLDQ--N--KKDKTMIDIKYELNEADLQIKQMEIEVN-SLp----yQTKQQLQQKIKRYRNEWD 107 Tetrahymena thermop...
A0BIB1    18 YKAHMESVMHYLLKISNDRK--D--DNNKSFSKVCDRLQQAEQCIKQMELEAS-TLs----vSYKKELMETVKQYKRDMA 88  Paramecium tetraurelia
A0E3A1    12 FEKYQQQVCSLIRQTQIN-------RSDETLKEIASVFTDLQNCLQQMDIEST-SIa----vSDRQELKNKVKRYKSETE 79  Paramecium tetraurelia
EEH57989  12 FLEYTASINRATASLPSLDG--A--AKSQKIAEVDAEVAEAEALVRRMDLEAR-SLrd---pTVKTPMLAKLRDYKSELQ 83  Micromonas pusilla ...
Q23YX3    11 INDMLDNFEKEVKQLDKK----DaaQKKKAIQKNQTYLKSIEQMIQSYKLEVQ-ALd----rNESAQYTESLKQINSRYM 81  Tetrahymena thermop...
A0CX93    11 LNAELDKLQKEIDSLSKK----EynQKNAAIKKCQAQVKSISTLIESYELEIS-NLd----kVQSAKYNDSLRSINQRFQ 81  Paramecium tetraurelia

1VCS_A    85 KLETDFKR 92  house mouse
A0C5I0    87 EMNKVYTQ 94  Paramecium tetraurelia
EED87455  90 NLRDDYEA 97  Thalassiosira pseudonana CCMP1335
Q7RGW8    88 KYKDEFLE 95  Plasmodium yoelii yoelii
Q24E32   108 SLKKKqik 115 Tetrahymena thermophila SB210
A0BIB1    89 KVEKDFKQ 96  Paramecium tetraurelia
A0E3A1    80 AMKKQFRI 87  Paramecium tetraurelia
EEH57989  84 RLKRESQV 91  Micromonas pusilla CCMP1545
Q23YX3    82 RLKNDFEY 89  Tetrahymena thermophila SB210
A0CX93    82 RLKSELEF 89  Paramecium tetraurelia
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