1RIL,4E89


Conserved Protein Domain Family
RNase_H

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pfam00075: RNase_H 
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RNase H
RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers.
Statistics
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PSSM-Id: 395028
Aligned: 23 rows
Threshold Bit Score: 99.374
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1RIL_A    6 RKRVaLFTDGACLGN---PGPG--GWAA-LLrFHA------H--EKLLSGGe-ACTTNNRMELKAAIEGLK-AlkEPc-- 67   Thermus thermophilus
Q9UST8  122 DRQV-VYADGSSLRN---GKKGa-VAGCgVF-FGNdd---pR--NISVPLAg-EEQTNNRAELQAIILALEnT--SG--- 184  Schizosaccharomyces...
Q57XA9  119 REAVvVYVDGACRNNgsrSRERrpRAGFgGF-YGDgd---sR--NFKFPLPahEPQTNQRAELSALIHVLRvAldSHp-- 190  Trypanosoma brucei
Q04740  185 NKSMnVYCDGSSFGNg--TSSS--RAGY-GA-YFEg----aPeeNISEPLLs-GAQTNNRAEIEAVSEALK-K--IWekl 250  Saccharomyces cerev...
O92815 1223 DPDMtLFSDGS--YT---TGRG--GAAV-VM-HRPvt--ddF--IIIHQQP--GGASAQTAELLALAAACHlA--TDk-- 1283 Walleye dermal sarc...
4E89_A   10 daDYtWYTDGSSFLQ---EGQR--RAGAaVTtETE------V--IWARALP--AGTSAQRAELIALTQALKmA--EGk-- 70   Xenotropic MuLV-rel...
P18096 1045 PGAEtFYTDGSCNRQ---SKEG--KAGY-VT-DRG------K--DKVKVLE---QTTNQQAELEVFRMALA-D--SGp-- 1101 Human immunodeficie...
P10266  461 ENALtVFTDGSSN--------G--KAAY-TG-PKE------R--VIKTPY-----QSAQRDELVAVITVLQ-D--FDq-- 510  human
P31623 1314 pEATlIFTDGSSN--------G--TAAL-II-N--------Hq-TYYAQTS---FSSAQVVELFAVHQALL-T--VPt-- 1364 Jaagsiekte sheep re...
Q98451   28 NTVKiVYTDAS--IR---QKKG--GIGI-CSrSSVtgfeqwD--TFRASVN--ETKDINRNELGAIFASISmTd-IYs-- 92   Paramecium bursaria...
1RIL_A   68 -----EVD--LYTDSHYLKKaFTEgWLEGW------------------------------RKRGWr--TAEGkPVKN--- 105  Thermus thermophilus
Q9UST8  185 -----DLT--IRSDSNYSIKsLTT-WLPKW------------------------------KKNDFk-tSNSQ-PVKN--- 221  Schizosaccharomyces...
Q57XA9  191 -----CYNlcVYSDSKYTVMgVNS-YLHRWerngfktagggdvanidlwsqltklrnrhlSRCAEr-fTMEFr-FKA--- 259  Trypanosoma brucei
Q04740  251 tnekeKVNyqIKTDSEYVTK-LLN-DRYMTyd--------------------------nkKLEGLp-nSDLIvPLVQrfv 301  Saccharomyces cerev...
O92815 1284 -----TVN--IYTDSRYAYGvVHD-FGHLW-------------------------------M-HRgfvTSAGtPIKNh-- 1321 Walleye dermal sarc...
4E89_A   71 -----KLN--VYTDSRYAFAtAH---VHGE------------------------------IYRRRgllTSEGrEIKNk-- 108  Xenotropic MuLV-rel...
P18096 1102 -----KVN--IIVDSQYVMG-IVA---------------------------------------GQpteS-ENr-IVN--- 1129 Human immunodeficie...
P10266  511 -----PIN--IISDSAYVVQ-ATR-DVETAl-----------------------------IKYSMd-dQLNQ--LFN--- 546  human
P31623 1365 -----SFN--LFTDSSYVVG-ALQ-MIET---------------------------------VPIi-gTTSP-EVLNl-- 1398 Jaagsiekte sheep re...
Q98451   93 -----DIV--IYSDS--LTS-INN-IVHRT------------------------------KRNKYd--KLSS-------- 121  Paramecium bursaria...
1RIL_A  106 --RDLWEALLLAMA-PHR-VRFHFVKGH-TGHp-----ENERVDREARRQAQ 147  Thermus thermophilus
Q9UST8  222 --LDLINRASDLMS-DRN-VSLEYVKGH-STDy-----GNQQADMLARRGAS 263  Schizosaccharomyces pombe 972h-
Q57XA9  260 ---SLAAIA---AR-AVA-LQLKHVPGH-AGVy-----GNEMADRLAVEACE 297  Trypanosoma brucei
Q04740  302 kvKKYYELNKECFKnNGK-FQIEWVKGH-DGDp-----GNEMADFLAKKGAS 346  Saccharomyces cerevisiae S288C
O92815 1322 --KEIEYLLKQIMK-PKQ-VSVIKIEAHtKGVsme-vrGNAAADEAAKNAVF 1368 Walleye dermal sarcoma virus
4E89_A  109 --NEILALLKALFL-PKR-LSIIHCPGHqKGNsae-arGNRMADQAAREAAm 155  Xenotropic MuLV-related virus VP62
P18096 1130 ---QIIEEM---IK-KEA-VYVAWVPAH-KGIg-----GNQEVDHLVSQGIR 1167 Human immunodeficiency virus type 2 (ISOLATE BEN)
P10266  547 ---LLQQTV---RK-RNFpFYITYIRAH-TNLpgpltkANEQADLLVSSALI 590  human
P31623 1399 -fTLIQQVL--HCR-QHP-CFFGHIRAH-STLpgalvqGNHTADVLTKQVff 1444 Jaagsiekte sheep retrovirus
Q98451  122 ---FTLQLV---KErKGN-VYISKVKAH-SGNi-----GNTFADKLAKDGSE 160  Paramecium bursaria Chlorella virus 1
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