5TKM,2MZZ,2RPZ,5W3V


Conserved Protein Domain Family
APOBEC2

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pfam18772: APOBEC2 (this model, PSSM-Id:408543 is obsolete and has been replaced by 465863)
APOBEC2
APOBEC2 is a highly conserved (slow-evolving) family of AID/APOBECs found in most vertebrates including cartilaginous fishes. APOBEC2 is poorly understood in terms of their molecular functions and substrate specificity.
Statistics
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PSSM-Id: 408543
Aligned: 40 rows
Threshold Bit Score: 185.11
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5TKM_A        19 MDRDTFYDNFENEPI-L------SGRSYTWLCYEVKiKRG-RS-NLLWDTGVFRGQvyfkPQY-HAEMCFLSWFCGN-QL 87 
XP_015218858  22 LPQDHFYQEFCNTLR----------TCRTLLCFSLC-QSTk---ILWDIWGYAYNK----PGHsHAESMVLEEIKTFlTQ 83  spotted gar
XP_012966578 219 LTEDIFYMQFSNRHRvQpvqqrrYYQRKTYLCYLLE-PYN----DQQPLKGCLQNK----KDK-HAEILFIDKMRSl-EL 287 golden hamster
XP_005026884  46 LPAIFFKFQFRNVEY-S------SGRNKTFLCYVIE-TQGk---ESVTSRGYLEDEh---AAA-HAEIAFFNTILP--KC 108 mallard
XP_003511809  47 LPVNFFKFQFRNVEY-S------SGRNKTFLCYVVE-AQSkg-gQVQATRGYLEDEh---AGA-HAEEAFFNTILP--AF 111 Chinese hamster
XP_011611927  75 IDPLVFQFQFKNVEY-S------SGRNKTFLCYLVD-TGK-A--DEGLQRGYLEDEh---TGS-HAEEAFFTQCLP--HY 137 torafugu
KPP67229      63 LASFLFKFQFKNVEY-S------SGRNKTLLCFLVD-SQK-GYlEDELQRGYLEDEh---LGA-HAEEAFFQQVLP--EY 127 Asian bonytongue
XP_014003082 109 MSPFYFKFQFRNVEY-S------SGRNKTLLCYRVE-TPE-G--ATGPLQGYMEDEh---ATA-HVEVAFFTQVLP--HY 171 Atlantic salmon
XP_013873612  96 MSPFYFKFQFRNVEY-S------SGRNKTFLCYRVD-TAG-G--DTEPLKGYMEDEh---AMA-HVEEAFFQQVLP---- 156 Austrofundulus ...
2RPZ_A         9 LPVNFFKFQFRNVEY-S------SGRNKTFLCYVVE-VQSkGG-QAQATQGYLEDEh---AGA-HAEEAFFNTILP--AF 73 
5TKM_A        88 PADk---cFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISAARLyYYS-ERDYRRALCRLSQAGARVKIMDYEEFAYC 163
XP_015218858  84 NQPdktlkYTLTLYMSFSPCNECCYRLATYAKLERRIKINVMFSKLyFPE-HRKIQKGLQYLECAGVSLKVMEKQDFVTC 162 spotted gar
XP_012966578 288 c------qVRITCYLTWSPCPNCAQELAAFKKDHPDLVLRIYTSRLyFHW-RRKYQEGLCSLWRSGIQVDVMDLPQFTDC 360 golden hamster
XP_005026884 109 ESSl---rYNVTWYVSSSPCVTCADRITETLKKNKNLRLTIMVGRLf-MWeEPEMQAALKKMKSAGCKLRIMKPQDFEYV 184 mallard
XP_003511809 112 DPAl---kYNVTWYVSSSPCAACADRILKTLSKAKNLRLLILVGRLf-MWeEPEVQAALKKLKEAGCKLRIMKPQDFEYI 187 Chinese hamster
XP_011611927 138 DPAl---kYSVTWYMSSSPCCACAAKMAEALKARRNIKLSIFAARL-FEWeEAEIQAGLKALHIAGCKIRVMKPLDFSYT 213 torafugu
KPP67229     128 DPGr---rYQVTWYVSSSPCAACAAKLAEILRARPTLRLTIFSARL-FMWeEPEIQEGLKALAAAGCKLRVMKPVDFSYT 203 Asian bonytongue
XP_014003082 172 DSSq---eYEVRWYVSSSPCAACYTKMADVLRQRKKLRLYLLMSRL-FLWeEPEIEVGLRCLASLGVRMRMMKPSDFLSV 247 Atlantic salmon
XP_013873612 157 NSSk---eHDITWFVSSSPCAACAAKLATILQQRKKLRLTIFCSRL-FEWeEPEIREGLKALARAGCKLRMMKPADFQLV 232 Austrofundulus ...
2RPZ_A        74 DPAl---kYNVTWYVSSSPCAACADRILKTLSKTKNLRLLILVSRL-FMWeEPEVQAALKKLKEAGCKLRIMKPQDFEYI 149
5TKM_A       164 WENFVDNEG---Q----QFMPWYKFDENYAFLHRTLKEILR 197
XP_015218858 163 FYLFVTEHE--------AFQEWHCLDDMTKQYSSTLQAILN 195 spotted gar
XP_012966578 361 WTNFVSSQS--------PFRPWNNLEKNSRCIQRRLQRIKE 393 golden hamster
XP_005026884 185 WQNFVEQEE---GeeakAFVPWEDIQENFQYYEEKLAEILH 222 mallard
XP_003511809 188 WQNFVEQEE---Ges-kAFEPWEDIQENFLYYEEKLADILK 224 Chinese hamster
XP_011611927 214 WDTFVENED---Q----PLNLWADCKENYEYYHERLADILQ 247 torafugu
KPP67229     204 WDTFVENED---Q----TFSPWEDCQENYEYYQEKLAGILQ 237 Asian bonytongue
XP_014003082 248 WETFVEKEE---Dm---TFNPWEDCQDNYQYYQSRLNTFLK 282 Atlantic salmon
XP_013873612 233 WEMYVDKED---E----EFAPWEDCKENYEYYLEKLGEILN 266 Austrofundulus limnaeus
2RPZ_A       150 WQNFVEQEEgesK----AFEPWEDIQENFLYYEEKLADILK 186
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