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Conserved domains on  [gi|60593497|pdb|1SZ7|A]
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Chain A, Trafficking protein particle complex subunit 3

Protein Classification

BET3 family protein( domain architecture ID 10202206)

BET3 family protein such as trafficking protein particle complex subunit 3 (BET3), a component of the multisubunit transport protein particle (TRAPP) complex that may play a role in vesicular transport from endoplasmic reticulum to Golgi

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TRAPPC3_bet3 cd14942
Bet3-TRAPPC3 subunit of the TRAPP complex; Bet3 (also known as TRAPPC3) subunit of the ...
 24-178 5.90e-112

Bet3-TRAPPC3 subunit of the TRAPP complex; Bet3 (also known as TRAPPC3) subunit of the trafficking protein particle complex (TRAPP). Bet3 is one of the six core subunits of TRAPP complexes which play a key role in the regulation of ER-to-Golgi and intra-Golgi transport by tethering the vesicle membrane to the target membrane. TRAPPC3 has also been shown to be additionally important for membrane fusion during the formation of vesicular tubular clusters (VTC). In its core, Bet3 forms a hydrophobic channel that also contains a conserved acylation site.


:

Pssm-ID: 271345  Cd Length: 155  Bit Score: 315.99  E-value: 5.90e-112
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1SZ7_A       24 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSIT 103
Cdd:cd14942   1 NAELFTLTYGALVAQLLKDYEDVEEVNKQLDKMGYNIGVRLIEEFLAKSGVGRCKDFRETAEVIAKVAFKMFLGVTAEVT 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
1SZ7_A      104 NWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIR 178
Cdd:cd14942  81 NWSSDGDEFSLILEENPLADFVELPPELSGLWYSNILCGVIRGALEMVQMRVEVTFVQDTLRGDDVTEIRVKLIE 155
 
Name Accession Description Interval E-value
TRAPPC3_bet3 cd14942
Bet3-TRAPPC3 subunit of the TRAPP complex; Bet3 (also known as TRAPPC3) subunit of the ...
 24-178 5.90e-112

Bet3-TRAPPC3 subunit of the TRAPP complex; Bet3 (also known as TRAPPC3) subunit of the trafficking protein particle complex (TRAPP). Bet3 is one of the six core subunits of TRAPP complexes which play a key role in the regulation of ER-to-Golgi and intra-Golgi transport by tethering the vesicle membrane to the target membrane. TRAPPC3 has also been shown to be additionally important for membrane fusion during the formation of vesicular tubular clusters (VTC). In its core, Bet3 forms a hydrophobic channel that also contains a conserved acylation site.


Pssm-ID: 271345  Cd Length: 155  Bit Score: 315.99  E-value: 5.90e-112
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1SZ7_A       24 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSIT 103
Cdd:cd14942   1 NAELFTLTYGALVAQLLKDYEDVEEVNKQLDKMGYNIGVRLIEEFLAKSGVGRCKDFRETAEVIAKVAFKMFLGVTAEVT 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
1SZ7_A      104 NWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIR 178
Cdd:cd14942  81 NWSSDGDEFSLILEENPLADFVELPPELSGLWYSNILCGVIRGALEMVQMRVEVTFVQDTLRGDDVTEIRVKLIE 155
TRAPP pfam04051
Transport protein particle (TRAPP) component; TRAPP plays a key role in the targeting and/or ...
 28-173 6.22e-64

Transport protein particle (TRAPP) component; TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localize TRAPP to the Golgi.


Pssm-ID: 461147  Cd Length: 148  Bit Score: 194.23  E-value: 6.22e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1SZ7_A         28 FTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSP 107
Cdd:pfam04051   1 FALLYGELVAYLQKDSEDVEEVNKRLEKMGYNIGQRLIELFLARDSRCRFTDFLETLKFICKDVWKMLFGKQADNLETNH 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
1SZ7_A        108 AGdEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQM--AVEAKFV-QDTLKGDGVTEIR 173
Cdd:pfam04051  81 DG-EYVLIDNEPPLTRFVELPKDGSQLNYLAFLCGIIRGALEMLGFpaRVTAHFVpSDVLRGDTTFEIK 148
COG5128 COG5128
Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion];
28-157 8.24e-04

Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion];


Pssm-ID: 227457  Cd Length: 208  Bit Score: 38.75  E-value: 8.24e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1SZ7_A       28 FTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRchdfRET--ADVIAKVAFKM--YL--GITPS 101
Cdd:COG5128  45 MAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPK----REVriLTILQRIHFDLwsYLfgDSDDR 120

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
1SZ7_A      102 ITNWSPAGDEFsLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEA 157
Cdd:COG5128 121 LEKSREVDREY-MIVDNDPLLSrFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEV 176
 
Name Accession Description Interval E-value
TRAPPC3_bet3 cd14942
Bet3-TRAPPC3 subunit of the TRAPP complex; Bet3 (also known as TRAPPC3) subunit of the ...
 24-178 5.90e-112

Bet3-TRAPPC3 subunit of the TRAPP complex; Bet3 (also known as TRAPPC3) subunit of the trafficking protein particle complex (TRAPP). Bet3 is one of the six core subunits of TRAPP complexes which play a key role in the regulation of ER-to-Golgi and intra-Golgi transport by tethering the vesicle membrane to the target membrane. TRAPPC3 has also been shown to be additionally important for membrane fusion during the formation of vesicular tubular clusters (VTC). In its core, Bet3 forms a hydrophobic channel that also contains a conserved acylation site.


Pssm-ID: 271345  Cd Length: 155  Bit Score: 315.99  E-value: 5.90e-112
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1SZ7_A       24 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSIT 103
Cdd:cd14942   1 NAELFTLTYGALVAQLLKDYEDVEEVNKQLDKMGYNIGVRLIEEFLAKSGVGRCKDFRETAEVIAKVAFKMFLGVTAEVT 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
1SZ7_A      104 NWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIR 178
Cdd:cd14942  81 NWSSDGDEFSLILEENPLADFVELPPELSGLWYSNILCGVIRGALEMVQMRVEVTFVQDTLRGDDVTEIRVKLIE 155
TRAPPC_bet3-like cd14941
Bet3-like domains of TRAPP; Bet3-like domains of a subfamily of core components of the ...
 24-175 8.43e-80

Bet3-like domains of TRAPP; Bet3-like domains of a subfamily of core components of the trafficking protein particle complex (TRAPP) include TRAPPC3, TRAPPC5, and TRAPPC6A. TRAPP complexes play a key role in the regulation of ER-to-Golgi and intra-Golgi transport by tethering the vesicle membrane to the target membrane. TRAPPs are large multimeric protein complexes which contain six core subunits that belong to two distinct structural families, the bet3-like family and the sedlin-like family.


Pssm-ID: 271344  Cd Length: 152  Bit Score: 234.66  E-value: 8.43e-80
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1SZ7_A       24 SSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSIT 103
Cdd:cd14941   1 SVSLFALLFGEMVSQLCKDYESVGDVNTKLADMGFNIGARLIEDFLARKNGKRCTKVLDILLFIKKNAWKALFGKTPDIL 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
1SZ7_A      104 NWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMR 175
Cdd:cd14941  81 NWSHDDDTYSLIDNEPPLNDFISLPDENSSLNYSAFTCGIIRGILENVGFPCKVTAHWDKLGGDPGTEIMIK 152
TRAPP pfam04051
Transport protein particle (TRAPP) component; TRAPP plays a key role in the targeting and/or ...
 28-173 6.22e-64

Transport protein particle (TRAPP) component; TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localize TRAPP to the Golgi.


Pssm-ID: 461147  Cd Length: 148  Bit Score: 194.23  E-value: 6.22e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1SZ7_A         28 FTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSP 107
Cdd:pfam04051   1 FALLYGELVAYLQKDSEDVEEVNKRLEKMGYNIGQRLIELFLARDSRCRFTDFLETLKFICKDVWKMLFGKQADNLETNH 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
1SZ7_A        108 AGdEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQM--AVEAKFV-QDTLKGDGVTEIR 173
Cdd:pfam04051  81 DG-EYVLIDNEPPLTRFVELPKDGSQLNYLAFLCGIIRGALEMLGFpaRVTAHFVpSDVLRGDTTFEIK 148
COG5128 COG5128
Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion];
28-157 8.24e-04

Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion];


Pssm-ID: 227457  Cd Length: 208  Bit Score: 38.75  E-value: 8.24e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1SZ7_A       28 FTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRchdfRET--ADVIAKVAFKM--YL--GITPS 101
Cdd:COG5128  45 MAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRRRNPK----REVriLTILQRIHFDLwsYLfgDSDDR 120

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
1SZ7_A      102 ITNWSPAGDEFsLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEA 157
Cdd:COG5128 121 LEKSREVDREY-MIVDNDPLLSrFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEV 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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