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Conserved domains on  [gi|83753151|pdb|1VQ4|1]
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Chain 1, 50S ribosomal protein L37e

Protein Classification

50S ribosomal protein L37e( domain architecture ID 10005388)

50S ribosomal protein L37e binds to the 23S rRNA

Gene Ontology:  GO:0008270|GO:0019843|GO:0006412|GO:0005840|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 3-52 3.72e-18

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


:

Pssm-ID: 441729  Cd Length: 52  Bit Score: 69.21  E-value: 3.72e-18
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|.
1VQ4_1       3 GAGTPSQGKKN-TTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQ 52
Cdd:COG2126  2 SKGTPSMGKRNkGKTHIRCRRCGRNSYNVRKKYCASCGFGKSKRIRSYSWQ 52
 
Name Accession Description Interval E-value
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 3-52 3.72e-18

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 69.21  E-value: 3.72e-18
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|.
1VQ4_1       3 GAGTPSQGKKN-TTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQ 52
Cdd:COG2126  2 SKGTPSMGKRNkGKTHIRCRRCGRNSYNVRKKYCASCGFGKSKRIRSYSWQ 52
rpl37e PRK04179
50S ribosomal protein L37e; Reviewed
 2-54 4.42e-18

50S ribosomal protein L37e; Reviewed


Pssm-ID: 235242  Cd Length: 62  Bit Score: 69.27  E-value: 4.42e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
1VQ4_1        2 TGAGTPSQGKKNTT-THTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSK 54
Cdd:PRK04179  1 MSKGTPSMGKRNKGkTHIRCRRCGRHSYNVRKKYCAACGFGRSKRIRRYSWQNK 54
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 3-55 7.48e-16

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 63.37  E-value: 7.48e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
1VQ4_1         3 GAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFgKSAKRRDYEWQSKA 55
Cdd:pfam01907  1 TKGTPSFGKRHNKTHTLCRRCGRRSYHVQKKTCASCGY-PSARKRKYNWSAKA 52
 
Name Accession Description Interval E-value
RPL37A COG2126
Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 3-52 3.72e-18

Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441729  Cd Length: 52  Bit Score: 69.21  E-value: 3.72e-18
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|.
1VQ4_1       3 GAGTPSQGKKN-TTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQ 52
Cdd:COG2126  2 SKGTPSMGKRNkGKTHIRCRRCGRNSYNVRKKYCASCGFGKSKRIRSYSWQ 52
rpl37e PRK04179
50S ribosomal protein L37e; Reviewed
 2-54 4.42e-18

50S ribosomal protein L37e; Reviewed


Pssm-ID: 235242  Cd Length: 62  Bit Score: 69.27  E-value: 4.42e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
1VQ4_1        2 TGAGTPSQGKKNTT-THTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSK 54
Cdd:PRK04179  1 MSKGTPSMGKRNKGkTHIRCRRCGRHSYNVRKKYCAACGFGRSKRIRRYSWQNK 54
Ribosomal_L37e pfam01907
Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and ...
 3-55 7.48e-16

Ribosomal protein L37e; This family includes ribosomal protein L37 from eukaryotes and archaebacteria. The family contains many conserved cysteines and histidines suggesting that this protein may bind to zinc.


Pssm-ID: 460380  Cd Length: 53  Bit Score: 63.37  E-value: 7.48e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
1VQ4_1         3 GAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFgKSAKRRDYEWQSKA 55
Cdd:pfam01907  1 TKGTPSFGKRHNKTHTLCRRCGRRSYHVQKKTCASCGY-PSARKRKYNWSAKA 52
PTZ00073 PTZ00073
60S ribosomal protein L37; Provisional
 3-55 1.30e-11

60S ribosomal protein L37; Provisional


Pssm-ID: 240257  Cd Length: 91  Bit Score: 53.63  E-value: 1.30e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
1VQ4_1        3 GAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFgKSAKRRDYEWQSKA 55
Cdd:PTZ00073  2 TKGTGSFGKRHGKTHTLCRRCGKRSFHVQKKRCASCGY-PSAKMRRYNWSVKA 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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