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Conserved domains on  [gi|83753150|pdb|1VQ4|Z]
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Chain Z, 50S ribosomal protein L37Ae

Protein Classification

50S ribosomal protein L37Ae( domain architecture ID 10012104)

50S ribosomal protein L37Ae binds to 23S rRNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpl37ae PRK03976
50S ribosomal protein L37Ae; Reviewed
 2-81 4.61e-40

50S ribosomal protein L37Ae; Reviewed


:

Pssm-ID: 235183  Cd Length: 90  Bit Score: 127.01  E-value: 4.61e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VQ4_Z        2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAALSED 81
Cdd:PRK03976 11 AGRFGARYGRKIRKRVADIEEKMRAKHVCPVCGRPKVKRVGTGIWECRKCGAKFAGGAYTPETPAGKTVTRAIRRAVEEK 90
 
Name Accession Description Interval E-value
rpl37ae PRK03976
50S ribosomal protein L37Ae; Reviewed
 2-81 4.61e-40

50S ribosomal protein L37Ae; Reviewed


Pssm-ID: 235183  Cd Length: 90  Bit Score: 127.01  E-value: 4.61e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VQ4_Z        2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAALSED 81
Cdd:PRK03976 11 AGRFGARYGRKIRKRVADIEEKMRAKHVCPVCGRPKVKRVGTGIWECRKCGAKFAGGAYTPETPAGKTVTRAIRRAVEEK 90
RPL43A COG1997
Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 3-78 4.42e-36

Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37AE/L43A is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441600  Cd Length: 87  Bit Score: 116.57  E-value: 4.42e-36
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
1VQ4_Z       3 GRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAAL 78
Cdd:COG1997 12 GRFGPRYGRKLRKRVADIEEKMRAKHTCPECGSKRVKRVATGIWECRKCGYKFAGGAYVPETPAGKTVGRAIKRAT 87
Ribosomal_L37ae pfam01780
Ribosomal L37ae protein family; This ribosomal protein is found in archaebacteria and ...
 3-78 3.28e-32

Ribosomal L37ae protein family; This ribosomal protein is found in archaebacteria and eukaryotes. It contains four conserved cysteine residues that may bind to zinc.


Pssm-ID: 460325  Cd Length: 78  Bit Score: 106.49  E-value: 3.28e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
1VQ4_Z         3 GRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAAL 78
Cdd:pfam01780  2 GKYGTRYGASLRKMVKKIEISQHAKYTCPFCGKTKVKRVAVGIWHCKKCGKTFAGGAYTPTTPSAVTVKSAIRRLK 77
eL43_euk_arch TIGR00280
ribosomal protein eL43; This model finds eukaryotic ribosomal protein eL43 (previously L37a) ...
 2-83 8.06e-27

ribosomal protein eL43; This model finds eukaryotic ribosomal protein eL43 (previously L37a) and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272996  Cd Length: 92  Bit Score: 93.40  E-value: 8.06e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VQ4_Z         2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAALSED 81
Cdd:TIGR00280 11 TGRFGPRYGLKLRRQVKKIEIQQKAKYVCPFCGKKTVKRGSTGIWTCRKCGAKFAGGAYTPVTPAGKTVRKTIRRIVEMK 90


                 ..
1VQ4_Z        82 EE 83
Cdd:TIGR00280 91 EA 92
 
Name Accession Description Interval E-value
rpl37ae PRK03976
50S ribosomal protein L37Ae; Reviewed
 2-81 4.61e-40

50S ribosomal protein L37Ae; Reviewed


Pssm-ID: 235183  Cd Length: 90  Bit Score: 127.01  E-value: 4.61e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VQ4_Z        2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAALSED 81
Cdd:PRK03976 11 AGRFGARYGRKIRKRVADIEEKMRAKHVCPVCGRPKVKRVGTGIWECRKCGAKFAGGAYTPETPAGKTVTRAIRRAVEEK 90
RPL43A COG1997
Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]; Ribosomal ...
 3-78 4.42e-36

Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]; Ribosomal protein L37AE/L43A is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441600  Cd Length: 87  Bit Score: 116.57  E-value: 4.42e-36
                       10        20        30        40        50        60        70
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
1VQ4_Z       3 GRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAAL 78
Cdd:COG1997 12 GRFGPRYGRKLRKRVADIEEKMRAKHTCPECGSKRVKRVATGIWECRKCGYKFAGGAYVPETPAGKTVGRAIKRAT 87
Ribosomal_L37ae pfam01780
Ribosomal L37ae protein family; This ribosomal protein is found in archaebacteria and ...
 3-78 3.28e-32

Ribosomal L37ae protein family; This ribosomal protein is found in archaebacteria and eukaryotes. It contains four conserved cysteine residues that may bind to zinc.


Pssm-ID: 460325  Cd Length: 78  Bit Score: 106.49  E-value: 3.28e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
1VQ4_Z         3 GRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAAL 78
Cdd:pfam01780  2 GKYGTRYGASLRKMVKKIEISQHAKYTCPFCGKTKVKRVAVGIWHCKKCGKTFAGGAYTPTTPSAVTVKSAIRRLK 77
eL43_euk_arch TIGR00280
ribosomal protein eL43; This model finds eukaryotic ribosomal protein eL43 (previously L37a) ...
 2-83 8.06e-27

ribosomal protein eL43; This model finds eukaryotic ribosomal protein eL43 (previously L37a) and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272996  Cd Length: 92  Bit Score: 93.40  E-value: 8.06e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VQ4_Z         2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAALSED 81
Cdd:TIGR00280 11 TGRFGPRYGLKLRRQVKKIEIQQKAKYVCPFCGKKTVKRGSTGIWTCRKCGAKFAGGAYTPVTPAGKTVRKTIRRIVEMK 90


                 ..
1VQ4_Z        82 EE 83
Cdd:TIGR00280 91 EA 92
PTZ00255 PTZ00255
60S ribosomal protein L37a; Provisional
 2-75 3.05e-17

60S ribosomal protein L37a; Provisional


Pssm-ID: 240332  Cd Length: 90  Bit Score: 69.35  E-value: 3.05e-17
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
1VQ4_Z        2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIR 75
Cdd:PTZ00255 11 TGKYGTRYGASLRKQIKKIEISQHAKYFCPFCGKHAVKRQAVGIWRCKGCKKTVAGGAWTLSTPAASTVRSTIR 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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