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Conserved domains on  [gi|60593741|pdb|1VQY|D]
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Chain D, CRYSTAL STRUCTURE OF a NIPSNAP FAMILY PROTEIN (ATU5224) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 2.40 A RESOLUTION

Protein Classification

NIPSNAP family protein( domain architecture ID 10546788)

NIPSNAP family protein similar to Drosophila melanogaster protein NipSnap and vertebrate homologs, which may be involved in vesicular trafficking

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NIPSNAP pfam07978
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 15-114 5.84e-35

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


:

Pssm-ID: 429767  Cd Length: 102  Bit Score: 115.89  E-value: 5.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VQY_D         15 VEERIYRIRGGK*QEYLKLVREEGIAIQAPILGNLIGYFVTDIGPLSQVIH*WGYASLDDRAERRGKLAEDQRWQAFIPR 94
Cdd:pfam07978   1 YELRTYRLKPGKLAEFLENFARAIGARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAEREARRAALAADPGWEANVEE 80

                          90       100
                  ....*....|....*....|..
1VQY_D         95 LSVL--IESSENRILLPTDFSP 114
Cdd:pfam07978  81 TVPLgfIRRMESRILRPTPFSP 102
 
Name Accession Description Interval E-value
NIPSNAP pfam07978
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 15-114 5.84e-35

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


Pssm-ID: 429767  Cd Length: 102  Bit Score: 115.89  E-value: 5.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VQY_D         15 VEERIYRIRGGK*QEYLKLVREEGIAIQAPILGNLIGYFVTDIGPLSQVIH*WGYASLDDRAERRGKLAEDQRWQAFIPR 94
Cdd:pfam07978   1 YELRTYRLKPGKLAEFLENFARAIGARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAEREARRAALAADPGWEANVEE 80

                          90       100
                  ....*....|....*....|..
1VQY_D         95 LSVL--IESSENRILLPTDFSP 114
Cdd:pfam07978  81 TVPLgfIRRMESRILRPTPFSP 102
 
Name Accession Description Interval E-value
NIPSNAP pfam07978
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 15-114 5.84e-35

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


Pssm-ID: 429767  Cd Length: 102  Bit Score: 115.89  E-value: 5.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1VQY_D         15 VEERIYRIRGGK*QEYLKLVREEGIAIQAPILGNLIGYFVTDIGPLSQVIH*WGYASLDDRAERRGKLAEDQRWQAFIPR 94
Cdd:pfam07978   1 YELRTYRLKPGKLAEFLENFARAIGARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAEREARRAALAADPGWEANVEE 80

                          90       100
                  ....*....|....*....|..
1VQY_D         95 LSVL--IESSENRILLPTDFSP 114
Cdd:pfam07978  81 TVPLgfIRRMESRILRPTPFSP 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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