NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|159164069|pdb|2DBA|A]
View 

Chain A, Smooth muscle cell associated protein-1, isoform 2

Protein Classification

NlpI family protein( domain architecture ID 11469168)

NlpI family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
35-132 2.90e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 77.65  E-value: 2.90e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG4785  80 GVAYDSLGDYDLAIADFDQALELDP---DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156

                        90
                ....*....|....*...
2DBA_A      115 LDQAVLDLQRCVSLEPKN 132
Cdd:COG4785 157 YELAIADLEKALELDPND 174
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
35-132 2.90e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 77.65  E-value: 2.90e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG4785  80 GVAYDSLGDYDLAIADFDQALELDP---DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156

                        90
                ....*....|....*...
2DBA_A      115 LDQAVLDLQRCVSLEPKN 132
Cdd:COG4785 157 YELAIADLEKALELDPND 174
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 30-122 5.63e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 65.01  E-value: 5.63e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A         30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPqdqaVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL 109
Cdd:TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204

                          90
                  ....*....|...
2DBA_A        110 EKLGRLDQAVLDL 122
Cdd:TIGR00990 205 DGLGKYADALLDL 217
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 31-135 1.59e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.49  E-value: 1.59e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A        31 LRKEGNELFKCGDYGGALAAYTQALGLDATpqdQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 110
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                         90       100
                 ....*....|....*....|....*
2DBA_A       111 KLGRLDQAVLDLQRCVSLEPKNKVF 135
Cdd:PLN03088  82 KLEEYQTAKAALEKGASLAPGDSRF 106
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 33-98 4.87e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.24  E-value: 4.87e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
2DBA_A         33 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 70-130 5.10e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 38.76  E-value: 5.10e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
2DBA_A       70 NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130
Cdd:cd24142   5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 99-132 6.53e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 6.53e-04
                           10        20        30
                   ....*....|....*....|....*....|....
2DBA_A          99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
35-132 2.90e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 77.65  E-value: 2.90e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG4785  80 GVAYDSLGDYDLAIADFDQALELDP---DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156

                        90
                ....*....|....*...
2DBA_A      115 LDQAVLDLQRCVSLEPKN 132
Cdd:COG4785 157 YELAIADLEKALELDPND 174
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 21-142 2.45e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 77.34  E-value: 2.45e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100
Cdd:COG3914  71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNP---DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
2DBA_A      101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNkvfQEALRNI 142
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALELDPDN---AEALNNL 186
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-142 3.12e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.43  E-value: 3.12e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALELD---PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGR 91

                        90       100
                ....*....|....*....|....*...
2DBA_A      115 LDQAVLDLQRCVSLEPKNkvfQEALRNI 142
Cdd:COG0457  92 YEEALEDYDKALELDPDD---AEALYNL 116
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-142 2.22e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 2.22e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALELDP---DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125

                        90       100
                ....*....|....*....|....*...
2DBA_A      115 LDQAVLDLQRCVSLEPKNKVFQEALRNI 142
Cdd:COG0457 126 YDEAIEAYERALELDPDDADALYNLGIA 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 35-142 1.97e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.95  E-value: 1.97e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNP---DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGR 195

                        90       100
                ....*....|....*....|....*....
2DBA_A      115 LDQAVLDLQRCVSLEPKN-KVFQEALRNI 142
Cdd:COG3914 196 LEEAIAAYRRALELDPDNaDAHSNLLFAL 224
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
42-131 1.24e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 62.50  E-value: 1.24e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       42 GDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAEtEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLD 121
Cdd:COG3063   6 GDLEEAEEYYEKALELDP---DNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                        90
                ....*....|
2DBA_A      122 LQRCVSLEPK 131
Cdd:COG3063  82 LERALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-124 1.29e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 1.29e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG0457  83 GLALQALGRYEEALEDYDKALELDP---DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159

                        90
                ....*....|
2DBA_A      115 LDQAVLDLQR 124
Cdd:COG0457 160 YEEALELLEK 169
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 38-130 1.64e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.83  E-value: 1.64e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       38 LFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQ 117
Cdd:COG5010  64 YNKLGDFEESLALLEQALQLDP---NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140

                        90
                ....*....|...
2DBA_A      118 AVLDLQRCVSLEP 130
Cdd:COG5010 141 AKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 35-142 5.35e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 61.56  E-value: 5.35e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRLDP---DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100

                        90       100
                ....*....|....*....|....*...
2DBA_A      115 LDQAVLDLQRCVSLEPKNKVFQEALRNI 142
Cdd:COG4235 101 YAEAIAAWQKLLALLPADAPARLLEASI 128
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 30-122 5.63e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 65.01  E-value: 5.63e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A         30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPqdqaVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL 109
Cdd:TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204

                          90
                  ....*....|...
2DBA_A        110 EKLGRLDQAVLDL 122
Cdd:TIGR00990 205 DGLGKYADALLDL 217
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 25-132 2.62e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.21  E-value: 2.62e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                        90       100
                ....*....|....*....|....*...
2DBA_A      105 RSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Cdd:COG4783  78 LGLALLKAGDYDEALALLEKALKLDPEH 105
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 35-132 9.50e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.66  E-value: 9.50e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG4783  45 GEILLQLGDLDEAIVLLHEALELD---PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121

                        90
                ....*....|....*...
2DBA_A      115 LDQAVLDLQRCVSLEPKN 132
Cdd:COG4783 122 PDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
63-132 5.13e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.48  E-value: 5.13e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       63 DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD 75
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 31-135 1.59e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 57.49  E-value: 1.59e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A        31 LRKEGNELFKCGDYGGALAAYTQALGLDATpqdQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 110
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                         90       100
                 ....*....|....*....|....*
2DBA_A       111 KLGRLDQAVLDLQRCVSLEPKNKVF 135
Cdd:PLN03088  82 KLEEYQTAKAALEKGASLAPGDSRF 106
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-132 1.82e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 1.82e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLD---PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGD 227

                        90
                ....*....|....*...
2DBA_A      115 LDQAVLDLQRCVSLEPKN 132
Cdd:COG2956 228 PEEALELLRKALELDPSD 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-142 2.18e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 2.18e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       42 GDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLD 121
Cdd:COG2956 124 GDWEKAIEVLERLLKLG---PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAA 200

                        90       100
                ....*....|....*....|.
2DBA_A      122 LQRCVSLEPKNKVFQEALRNI 142
Cdd:COG2956 201 LERALEQDPDYLPALPRLAEL 221
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-136 5.04e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 5.04e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG2956  49 GNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGD 125

                        90       100
                ....*....|....*....|..
2DBA_A      115 LDQAVLDLQRCVSLEPKNKVFQ 136
Cdd:COG2956 126 WEKAIEVLERLLKLGPENAHAY 147
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
43-141 5.27e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 52.61  E-value: 5.27e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 122
Cdd:COG4785  51 AALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF 130

                        90
                ....*....|....*....
2DBA_A      123 QRCVSLEPKNkvfQEALRN 141
Cdd:COG4785 131 DRALELDPDY---AYAYLN 146
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 34-142 5.51e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 5.51e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       34 EGNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLG 113
Cdd:COG2956  14 KGLNYLLNGQPDKAIDLLEEALELD---PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                        90       100
                ....*....|....*....|....*....
2DBA_A      114 RLDQAVLDLQRCVSLEPKNKVFQEALRNI 142
Cdd:COG2956  91 LLDRAEELLEKLLELDPDDAEALRLLAEI 119
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 37-138 1.24e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.99  E-value: 1.24e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       37 ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK---ALYRRSQALEKLG 113
Cdd:COG1729   2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                        90       100
                ....*....|....*....|....*
2DBA_A      114 RLDQAVLDLQRCVSLEPKNKVFQEA 138
Cdd:COG1729  82 DYDKARATLEELIKKYPDSEAAKEA 106
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-132 1.43e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 1.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDatPQDQAVLhRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG2956  83 AQDYLKAGLLDRAEELLEKLLELD--PDDAEAL-RLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGD 159

                        90
                ....*....|....*...
2DBA_A      115 LDQAVLDLQRCVSLEPKN 132
Cdd:COG2956 160 YDEAIEALEKALKLDPDC 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 64-139 1.55e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 1.55e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
2DBA_A       64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
Cdd:COG4783   3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 47-132 3.75e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.85  E-value: 3.75e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       47 ALAAYTQALGLDatPQDqAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 126
Cdd:COG4235   2 AIARLRQALAAN--PND-AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAL 78


                ....*.
2DBA_A      127 SLEPKN 132
Cdd:COG4235  79 ALDPDN 84
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 47-139 1.48e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 1.48e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       47 ALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 126
Cdd:COG5010  36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115

                        90
                ....*....|...
2DBA_A      127 SLEPKNKVFQEAL 139
Cdd:COG5010 116 ALSPDNPNAYSNL 128
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
74-132 2.48e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 2.48e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
2DBA_A       74 CHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAvLDLQRCVSLEPKN 132
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNN 58
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
35-124 5.98e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.83  E-value: 5.98e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDatPQDQAVlHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELD--PDYAYA-YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDP 190

                        90
                ....*....|
2DBA_A      115 lDQAVLDLQR 124
Cdd:COG4785 191 -EKALALLLE 199
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 39-132 6.70e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 47.29  E-value: 6.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A         39 FKC--GDYGGALAAYTQALGLDATPQDQAVlhrNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLD 116
Cdd:TIGR00990 340 FKClkGKHLEALADLSKSIELDPRVTQSYI---KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416

                          90
                  ....*....|....*.
2DBA_A        117 QAVLDLQRCVSLEPKN 132
Cdd:TIGR00990 417 QAGKDYQKSIDLDPDF 432
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
35-118 1.12e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 46.41  E-value: 1.12e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGlDATPQDQAVLHRnRAACHLKLEDYDKAETEASKAIEKD----GGDVKALYRRsqALE 110
Cdd:COG4700  96 ADALLELGRYDEAIELYEEALT-GIFADDPHILLG-LAQALFELGRYAEALETLEKLIAKNpdfkSSDAHLLYAR--ALE 171


                ....*...
2DBA_A      111 KLGRLDQA 118
Cdd:COG4700 172 ALGDLEAA 179
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 47-132 3.55e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 3.55e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       47 ALAAYTQALGLDATPQDQAVLHRNRAACHlKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 126
Cdd:COG3914  61 ALAAGEAAAAAAALLLLAALLELAALLLQ-ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRAL 139


                ....*.
2DBA_A      127 SLEPKN 132
Cdd:COG3914 140 ALNPDF 145
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-123 1.75e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 1.75e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:COG0457 117 GLALLELGRYDEAIEAYERALELDP---DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAA 193


                ....*....
2DBA_A      115 LDQAVLDLQ 123
Cdd:COG0457 194 EVLLALLLA 202
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 33-98 4.87e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.24  E-value: 4.87e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
2DBA_A         33 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR_1 pfam00515
Tetratricopeptide repeat;
99-132 1.28e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 1.28e-04
                          10        20        30
                  ....*....|....*....|....*....|....
2DBA_A         99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 42-118 2.78e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 38.88  E-value: 2.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A        42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL--------YRRSQALEKlG 113
Cdd:PRK02603  49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALnniaviyhKRGEKAEEA-G 127


                 ....*
2DBA_A       114 RLDQA 118
Cdd:PRK02603 128 DQDEA 132
TPR_8 pfam13181
Tetratricopeptide repeat;
99-131 4.13e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.84  E-value: 4.13e-04
                          10        20        30
                  ....*....|....*....|....*....|...
2DBA_A         99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_12 pfam13424
Tetratricopeptide repeat;
63-128 4.28e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.98  E-value: 4.28e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
2DBA_A         63 DQAVLHRNRAACHLKLEDYDKAETEASKAIE----KDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEiarrLLGPDhpltATTLLNLGRLYLELGRYEEALELLERALAL 74
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 83-132 4.51e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 4.51e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
2DBA_A       83 KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN 50
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 75-139 4.65e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.66  E-value: 4.65e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
2DBA_A       75 HLKLEDYDKAETEASKAIEKDGGDV---KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDAL 70
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 70-130 5.10e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 38.76  E-value: 5.10e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
2DBA_A       70 NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130
Cdd:cd24142   5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 99-132 6.53e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.50  E-value: 6.53e-04
                           10        20        30
                   ....*....|....*....|....*....|....
2DBA_A          99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 35-95 7.78e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.63  E-value: 7.78e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
2DBA_A       35 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95
Cdd:COG5010  95 ALLYSRSGDKDEAKEYYEKALALS---PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_11 pfam13414
TPR repeat;
35-78 9.42e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 9.42e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
2DBA_A         35 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKL 78
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLD---PDNPEAYYNLGLAYYKL 41
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 99-131 9.80e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 9.80e-04
                          10        20        30
                  ....*....|....*....|....*....|...
2DBA_A         99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_19 pfam14559
Tetratricopeptide repeat;
42-105 1.34e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.25  E-value: 1.34e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
2DBA_A         42 GDYGGALAAYTQALGLDatPQDQAVlHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRR 105
Cdd:pfam14559   2 GDYAEALELLEQALAED--PDNAEA-RLGLAEALLALGRLDEAEALLAALPAADPDDprYAALLAK 64
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 26-132 1.43e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.76  E-value: 1.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A         26 SSVEQLRKEGNELFKCGDYGGA----LAAYTQALG-----LDATP-QDQAVlhRNRAACHLKLEDYDKAETEASKAIEKD 95
Cdd:TIGR02917 282 ETLQDALKSAPEYLPALLLAGAseyqLGNLEQAYQylnqiLKYAPnSHQAR--RLLASIQLRLGRVDEAIATLSPALGLD 359

                          90       100       110
                  ....*....|....*....|....*....|....*..
2DBA_A         96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Cdd:TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN 396
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 35-132 1.63e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.76  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A         35 GNELFKCGDYGGALAAYTQALGLDatPQDQAVlHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 114
Cdd:TIGR02917 200 GDLLLSLGNIELALAAYRKAIALR--PNNIAV-LLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN 276

                          90
                  ....*....|....*...
2DBA_A        115 LDQAVLDLQRCVSLEPKN 132
Cdd:TIGR02917 277 YEDARETLQDALKSAPEY 294
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
47-132 2.03e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 36.82  E-value: 2.03e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DBA_A       47 ALAAYTQALGLDATPQDQAVLHRNRA-ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125
Cdd:COG4785  20 SKAAILLAALLFAAVLALAIALADLAlALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA 99


                ....*..
2DBA_A      126 VSLEPKN 132
Cdd:COG4785 100 LELDPDL 106
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 65-95 2.16e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.96  E-value: 2.16e-03
                           10        20        30
                   ....*....|....*....|....*....|.
2DBA_A          65 AVLHRNRAACHLKLEDYDKAETEASKAIEKD 95
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELD 31
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 15-84 2.21e-03

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 37.17  E-value: 2.21e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
2DBA_A        15 TPEPRPATPGA----SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-QAVLHrNRAACHLKLEDYDKA 84
Cdd:PLN03098  58 SPSSSPAKDGSeadvKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEaQAAYY-NKACCHAYREEGKKA 131
TPR_17 pfam13431
Tetratricopeptide repeat;
90-119 2.48e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 33.67  E-value: 2.48e-03
                          10        20        30
                  ....*....|....*....|....*....|
2DBA_A         90 KAIEKDGGDVKALYRRSQALEKLGRLDQAV 119
Cdd:pfam13431   4 KALELDPNNADAYYNLAVLLLELGQSETAL 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 63-133 7.32e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 35.83  E-value: 7.32e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
2DBA_A         63 DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
Cdd:TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 65-95 7.80e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 32.49  E-value: 7.80e-03
                          10        20        30
                  ....*....|....*....|....*....|.
2DBA_A         65 AVLHRNRAACHLKLEDYDKAETEASKAIEKD 95
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELD 31
TPR_1 pfam00515
Tetratricopeptide repeat;
65-95 8.60e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 32.39  E-value: 8.60e-03
                          10        20        30
                  ....*....|....*....|....*....|.
2DBA_A         65 AVLHRNRAACHLKLEDYDKAETEASKAIEKD 95
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH