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Conserved domains on  [gi|203282294|pdb|2VX4|A]
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Chain A, CELLVIBRIO JAPONICUS MANNANASE CJMAN26C

Protein Classification

glycoside hydrolase family 26 protein( domain architecture ID 10008320)

glycoside hydrolase family 26 protein such as mannan endo-1,4-beta-mannosidase that catalyzes the endo hydrolysis of beta-1,4-linked mannan, galactomannan and glucomannan

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ManB2 COG4124
Beta-mannanase [Carbohydrate transport and metabolism];
64-380 9.79e-53

Beta-mannanase [Carbohydrate transport and metabolism];


:

Pssm-ID: 443300  Cd Length: 330  Bit Score: 178.39  E-value: 9.79e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A       64 SLAYGVHWEGDMDRSDVRDVTGANPAVYGWELGGLELGHTANLDAVNFEKMQHWIKAGYSRGGVITISWHVFNPVSGGNS 143
Cdd:COG4124  40 TGAAGAGPSSGLGGGTAKLGGAVAGAGGQGAGGGGRGGALGGADNGAGAASGQLAAATTEYKLGAAALVTLASGLLAATP 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A      144 WDKTPAVHELIPGGARHATLKAYLDTFVAFnegLADVDAQGnkhypPIIFRPWHEHNGDWFWWGkGHASEQDYIALWRFT 223
Cdd:COG4124 120 VSGAGGTNGLKPGGIAHGAYDAYLDRIADF---LKSLQAGV-----PVIFRPGHEMNGGWFWWG-AGADPEDYKALWRHV 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A      224 VHYLRDEKKLRNLIYAYSPDRSridmANFEAGYLYGYPGDAYVDIIGLDNYWDvgheANTASADEQKAALTASLKQLVQI 303
Cdd:COG4124 191 VDYLRNTGGLPNLIWVWSPNGG----FPSSADYLDYYPGDDYVDIVGLDGYND----GPTDPWQSFDELLDPGYDELRAF 262

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
2VX4_A      304 ARSKGKIAALTETGNNRLTIDN-FWTERLLGPIsaDADASEIAYVMvWRNANlarekseQFFAPFPGQATADDFKRFY 380
Cdd:COG4124 263 ARAHGKPIAITETGPEPDPYDKaAWITDLLDAL--RAKYPKISYFI-WFNGD-------DDWRVDPSPNSAAAFKKFY 330
 
Name Accession Description Interval E-value
ManB2 COG4124
Beta-mannanase [Carbohydrate transport and metabolism];
64-380 9.79e-53

Beta-mannanase [Carbohydrate transport and metabolism];


Pssm-ID: 443300  Cd Length: 330  Bit Score: 178.39  E-value: 9.79e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A       64 SLAYGVHWEGDMDRSDVRDVTGANPAVYGWELGGLELGHTANLDAVNFEKMQHWIKAGYSRGGVITISWHVFNPVSGGNS 143
Cdd:COG4124  40 TGAAGAGPSSGLGGGTAKLGGAVAGAGGQGAGGGGRGGALGGADNGAGAASGQLAAATTEYKLGAAALVTLASGLLAATP 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A      144 WDKTPAVHELIPGGARHATLKAYLDTFVAFnegLADVDAQGnkhypPIIFRPWHEHNGDWFWWGkGHASEQDYIALWRFT 223
Cdd:COG4124 120 VSGAGGTNGLKPGGIAHGAYDAYLDRIADF---LKSLQAGV-----PVIFRPGHEMNGGWFWWG-AGADPEDYKALWRHV 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A      224 VHYLRDEKKLRNLIYAYSPDRSridmANFEAGYLYGYPGDAYVDIIGLDNYWDvgheANTASADEQKAALTASLKQLVQI 303
Cdd:COG4124 191 VDYLRNTGGLPNLIWVWSPNGG----FPSSADYLDYYPGDDYVDIVGLDGYND----GPTDPWQSFDELLDPGYDELRAF 262

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
2VX4_A      304 ARSKGKIAALTETGNNRLTIDN-FWTERLLGPIsaDADASEIAYVMvWRNANlarekseQFFAPFPGQATADDFKRFY 380
Cdd:COG4124 263 ARAHGKPIAITETGPEPDPYDKaAWITDLLDAL--RAKYPKISYFI-WFNGD-------DDWRVDPSPNSAAAFKKFY 330
Glyco_hydro_26 pfam02156
Glycosyl hydrolase family 26;
34-274 5.03e-43

Glycosyl hydrolase family 26;


Pssm-ID: 396639  Cd Length: 311  Bit Score: 152.44  E-value: 5.03e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A         34 IDTQATAETRALYRNLAKLRYKHLLFGHEDSLAygvHWEGDM-DRSDVRDVTGANPAVYGWEL--GGLELGHTANLDAV- 109
Cdd:pfam02156   1 VDPNATMETRSLMAFLQEQRRHSILSGHQGGLT---ITRTDGtQASDIFNATGDFPAIYGFDMidGWDTLSIVEPKAAGd 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A        110 -NFEKMQHWikagySRGGVITISWHVFNPVSG------GNSWDKTPAVHELIPGGArHATLKAYLDtfvAFNEGLADVDA 182
Cdd:pfam02156  78 iVQDKKAYW-----RMGGIIQVSSHFDNPKTQkgvfptGTTWDQTPAVLDSLPGGA-YKVLNGYLD---QIAEWLNNLKD 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A        183 QGnkhyPPIIFRPWHEHNGDWFWWG-KGHASEQDYIALWRFTVHYLRDEKKLRNLIYAYSPDRSRIDMANFeagylygYP 261
Cdd:pfam02156 149 EQ----VPVLFRPLHENTGSWFWWGdKGQSTPEQYKQLFRYSVEYLRDVKGVRNLIWVYSPNNFWDVTEAN-------YP 217

                         250
                  ....*....|...
2VX4_A        262 GDAYVDIIGLDNY 274
Cdd:pfam02156 218 GDEYVDIVGFDTY 230
 
Name Accession Description Interval E-value
ManB2 COG4124
Beta-mannanase [Carbohydrate transport and metabolism];
64-380 9.79e-53

Beta-mannanase [Carbohydrate transport and metabolism];


Pssm-ID: 443300  Cd Length: 330  Bit Score: 178.39  E-value: 9.79e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A       64 SLAYGVHWEGDMDRSDVRDVTGANPAVYGWELGGLELGHTANLDAVNFEKMQHWIKAGYSRGGVITISWHVFNPVSGGNS 143
Cdd:COG4124  40 TGAAGAGPSSGLGGGTAKLGGAVAGAGGQGAGGGGRGGALGGADNGAGAASGQLAAATTEYKLGAAALVTLASGLLAATP 119

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A      144 WDKTPAVHELIPGGARHATLKAYLDTFVAFnegLADVDAQGnkhypPIIFRPWHEHNGDWFWWGkGHASEQDYIALWRFT 223
Cdd:COG4124 120 VSGAGGTNGLKPGGIAHGAYDAYLDRIADF---LKSLQAGV-----PVIFRPGHEMNGGWFWWG-AGADPEDYKALWRHV 190

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A      224 VHYLRDEKKLRNLIYAYSPDRSridmANFEAGYLYGYPGDAYVDIIGLDNYWDvgheANTASADEQKAALTASLKQLVQI 303
Cdd:COG4124 191 VDYLRNTGGLPNLIWVWSPNGG----FPSSADYLDYYPGDDYVDIVGLDGYND----GPTDPWQSFDELLDPGYDELRAF 262

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
2VX4_A      304 ARSKGKIAALTETGNNRLTIDN-FWTERLLGPIsaDADASEIAYVMvWRNANlarekseQFFAPFPGQATADDFKRFY 380
Cdd:COG4124 263 ARAHGKPIAITETGPEPDPYDKaAWITDLLDAL--RAKYPKISYFI-WFNGD-------DDWRVDPSPNSAAAFKKFY 330
Glyco_hydro_26 pfam02156
Glycosyl hydrolase family 26;
34-274 5.03e-43

Glycosyl hydrolase family 26;


Pssm-ID: 396639  Cd Length: 311  Bit Score: 152.44  E-value: 5.03e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A         34 IDTQATAETRALYRNLAKLRYKHLLFGHEDSLAygvHWEGDM-DRSDVRDVTGANPAVYGWEL--GGLELGHTANLDAV- 109
Cdd:pfam02156   1 VDPNATMETRSLMAFLQEQRRHSILSGHQGGLT---ITRTDGtQASDIFNATGDFPAIYGFDMidGWDTLSIVEPKAAGd 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A        110 -NFEKMQHWikagySRGGVITISWHVFNPVSG------GNSWDKTPAVHELIPGGArHATLKAYLDtfvAFNEGLADVDA 182
Cdd:pfam02156  78 iVQDKKAYW-----RMGGIIQVSSHFDNPKTQkgvfptGTTWDQTPAVLDSLPGGA-YKVLNGYLD---QIAEWLNNLKD 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2VX4_A        183 QGnkhyPPIIFRPWHEHNGDWFWWG-KGHASEQDYIALWRFTVHYLRDEKKLRNLIYAYSPDRSRIDMANFeagylygYP 261
Cdd:pfam02156 149 EQ----VPVLFRPLHENTGSWFWWGdKGQSTPEQYKQLFRYSVEYLRDVKGVRNLIWVYSPNNFWDVTEAN-------YP 217

                         250
                  ....*....|...
2VX4_A        262 GDAYVDIIGLDNY 274
Cdd:pfam02156 218 GDEYVDIVGFDTY 230
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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