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Conserved domains on  [gi|169791895|pdb|3CBW|A]
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Chain A, YdhT protein

Protein Classification

glycoside hydrolase family 26 protein( domain architecture ID 10490016)

glycoside hydrolase family 26 protein such as mannan endo-1,4-beta-mannosidase that catalyzes the endo hydrolysis of beta-1,4-linked mannan, galactomannan and glucomannan

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_hydro_26 pfam02156
Glycosyl hydrolase family 26;
15-333 1.00e-167

Glycosyl hydrolase family 26;


:

Pssm-ID: 396639  Cd Length: 311  Bit Score: 469.84  E-value: 1.00e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A         15 VNPNAQQTTKTVMNWLAHLPNrteNRVLSGAFGGYSHDTFSMAEADRIRSATGQSPAIYGCDYARGWLETANIEDSIDVS 94
Cdd:pfam02156   1 VDPNATMETRSLMAFLQEQRR---HSILSGHQGGLTITRTDGTQASDIFNATGDFPAIYGFDMIDGWDTLSIVEPKAAGD 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A         95 CNGDLMSYWKNGGIPQISLHLANPAFQSGHFKTPITNDQYKKILDSS-TVEGKRLNAMLSKIADGLQELENQGVPVLFRP 173
Cdd:pfam02156  78 IVQDKKAYWRMGGIIQVSSHFDNPKTQKGVFPTGTTWDQTPAVLDSLpGGAYKVLNGYLDQIAEWLNNLKDEQVPVLFRP 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A        174 LHEMNGEWFWWGLTSYnqkdnERISLYKQLYKKIYHYMTDTRGLDHLIWVYSPDANRDFKTDFYPGASYVDIVGLDAYFQ 253
Cdd:pfam02156 158 LHENTGSWFWWGDKGQ-----STPEQYKQLFRYSVEYLRDVKGVRNLIWVYSPNNFWDVTEANYPGDEYVDIVGFDTYGP 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A        254 DAYSING-YDQLTALNKPFAFTEVGPqtANGSFDYSLFINAIKQKYPktiYFLAWND---EWSAAVNKGASALYHDSWTL 329
Cdd:pfam02156 233 NVADNAGwFRNVVAIFNAALVARMAE--ANGKIPDPDVISGIKIRAP---WFDIWAGlynQWYRKLISGLKAVFNHPFVI 307


                  ....
3CBW_A        330 NKGE 333
Cdd:pfam02156 308 TKDE 311
 
Name Accession Description Interval E-value
Glyco_hydro_26 pfam02156
Glycosyl hydrolase family 26;
15-333 1.00e-167

Glycosyl hydrolase family 26;


Pssm-ID: 396639  Cd Length: 311  Bit Score: 469.84  E-value: 1.00e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A         15 VNPNAQQTTKTVMNWLAHLPNrteNRVLSGAFGGYSHDTFSMAEADRIRSATGQSPAIYGCDYARGWLETANIEDSIDVS 94
Cdd:pfam02156   1 VDPNATMETRSLMAFLQEQRR---HSILSGHQGGLTITRTDGTQASDIFNATGDFPAIYGFDMIDGWDTLSIVEPKAAGD 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A         95 CNGDLMSYWKNGGIPQISLHLANPAFQSGHFKTPITNDQYKKILDSS-TVEGKRLNAMLSKIADGLQELENQGVPVLFRP 173
Cdd:pfam02156  78 IVQDKKAYWRMGGIIQVSSHFDNPKTQKGVFPTGTTWDQTPAVLDSLpGGAYKVLNGYLDQIAEWLNNLKDEQVPVLFRP 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A        174 LHEMNGEWFWWGLTSYnqkdnERISLYKQLYKKIYHYMTDTRGLDHLIWVYSPDANRDFKTDFYPGASYVDIVGLDAYFQ 253
Cdd:pfam02156 158 LHENTGSWFWWGDKGQ-----STPEQYKQLFRYSVEYLRDVKGVRNLIWVYSPNNFWDVTEANYPGDEYVDIVGFDTYGP 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A        254 DAYSING-YDQLTALNKPFAFTEVGPqtANGSFDYSLFINAIKQKYPktiYFLAWND---EWSAAVNKGASALYHDSWTL 329
Cdd:pfam02156 233 NVADNAGwFRNVVAIFNAALVARMAE--ANGKIPDPDVISGIKIRAP---WFDIWAGlynQWYRKLISGLKAVFNHPFVI 307


                  ....
3CBW_A        330 NKGE 333
Cdd:pfam02156 308 TKDE 311
ManB2 COG4124
Beta-mannanase [Carbohydrate transport and metabolism];
30-324 5.28e-46

Beta-mannanase [Carbohydrate transport and metabolism];


Pssm-ID: 443300  Cd Length: 330  Bit Score: 159.51  E-value: 5.28e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A       30 LAHLPNRTENRVLSGAFGGYSHDTFSMAEADRIRSATGQSPAIYGCDYARGWLETaniEDSIDVSCNGDLMSYWKNGGIP 109
Cdd:COG4124  24 AAAAALAAATASIVSATGAAGAGPSSGLGGGTAKLGGAVAGAGGQGAGGGGRGGA---LGGADNGAGAASGQLAAATTEY 100

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A      110 QISLHLANPAFQSGHFKTPITNDQYKKILDSSTVEGKRLNAMLSKIADGLQELeNQGVPVLFRPLHEMNGEWFWWGLtsy 189
Cdd:COG4124 101 KLGAAALVTLASGLLAATPVSGAGGTNGLKPGGIAHGAYDAYLDRIADFLKSL-QAGVPVIFRPGHEMNGGWFWWGA--- 176

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A      190 nqkdNERISLYKQLYKKIYHYMTDTRGLDHLIWVYSPDANRDFK---TDFYPGASYVDIVGLDAYFQDAYSI-------- 258
Cdd:COG4124 177 ----GADPEDYKALWRHVVDYLRNTGGLPNLIWVWSPNGGFPSSadyLDYYPGDDYVDIVGLDGYNDGPTDPwqsfdell 252

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3CBW_A      259 -NGYDQLTAL----NKPFAFTEVGPQTANG--SFDYSLFINAIKQKYPKTIYFLAWNDEWSAAVNKGASALYH 324
Cdd:COG4124 253 dPGYDELRAFarahGKPIAITETGPEPDPYdkAAWITDLLDALRAKYPKISYFIWFNGDDDWRVDPSPNSAAA 325
 
Name Accession Description Interval E-value
Glyco_hydro_26 pfam02156
Glycosyl hydrolase family 26;
15-333 1.00e-167

Glycosyl hydrolase family 26;


Pssm-ID: 396639  Cd Length: 311  Bit Score: 469.84  E-value: 1.00e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A         15 VNPNAQQTTKTVMNWLAHLPNrteNRVLSGAFGGYSHDTFSMAEADRIRSATGQSPAIYGCDYARGWLETANIEDSIDVS 94
Cdd:pfam02156   1 VDPNATMETRSLMAFLQEQRR---HSILSGHQGGLTITRTDGTQASDIFNATGDFPAIYGFDMIDGWDTLSIVEPKAAGD 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A         95 CNGDLMSYWKNGGIPQISLHLANPAFQSGHFKTPITNDQYKKILDSS-TVEGKRLNAMLSKIADGLQELENQGVPVLFRP 173
Cdd:pfam02156  78 IVQDKKAYWRMGGIIQVSSHFDNPKTQKGVFPTGTTWDQTPAVLDSLpGGAYKVLNGYLDQIAEWLNNLKDEQVPVLFRP 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A        174 LHEMNGEWFWWGLTSYnqkdnERISLYKQLYKKIYHYMTDTRGLDHLIWVYSPDANRDFKTDFYPGASYVDIVGLDAYFQ 253
Cdd:pfam02156 158 LHENTGSWFWWGDKGQ-----STPEQYKQLFRYSVEYLRDVKGVRNLIWVYSPNNFWDVTEANYPGDEYVDIVGFDTYGP 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A        254 DAYSING-YDQLTALNKPFAFTEVGPqtANGSFDYSLFINAIKQKYPktiYFLAWND---EWSAAVNKGASALYHDSWTL 329
Cdd:pfam02156 233 NVADNAGwFRNVVAIFNAALVARMAE--ANGKIPDPDVISGIKIRAP---WFDIWAGlynQWYRKLISGLKAVFNHPFVI 307


                  ....
3CBW_A        330 NKGE 333
Cdd:pfam02156 308 TKDE 311
ManB2 COG4124
Beta-mannanase [Carbohydrate transport and metabolism];
30-324 5.28e-46

Beta-mannanase [Carbohydrate transport and metabolism];


Pssm-ID: 443300  Cd Length: 330  Bit Score: 159.51  E-value: 5.28e-46
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A       30 LAHLPNRTENRVLSGAFGGYSHDTFSMAEADRIRSATGQSPAIYGCDYARGWLETaniEDSIDVSCNGDLMSYWKNGGIP 109
Cdd:COG4124  24 AAAAALAAATASIVSATGAAGAGPSSGLGGGTAKLGGAVAGAGGQGAGGGGRGGA---LGGADNGAGAASGQLAAATTEY 100

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A      110 QISLHLANPAFQSGHFKTPITNDQYKKILDSSTVEGKRLNAMLSKIADGLQELeNQGVPVLFRPLHEMNGEWFWWGLtsy 189
Cdd:COG4124 101 KLGAAALVTLASGLLAATPVSGAGGTNGLKPGGIAHGAYDAYLDRIADFLKSL-QAGVPVIFRPGHEMNGGWFWWGA--- 176

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3CBW_A      190 nqkdNERISLYKQLYKKIYHYMTDTRGLDHLIWVYSPDANRDFK---TDFYPGASYVDIVGLDAYFQDAYSI-------- 258
Cdd:COG4124 177 ----GADPEDYKALWRHVVDYLRNTGGLPNLIWVWSPNGGFPSSadyLDYYPGDDYVDIVGLDGYNDGPTDPwqsfdell 252

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
3CBW_A      259 -NGYDQLTAL----NKPFAFTEVGPQTANG--SFDYSLFINAIKQKYPKTIYFLAWNDEWSAAVNKGASALYH 324
Cdd:COG4124 253 dPGYDELRAFarahGKPIAITETGPEPDPYdkAAWITDLLDALRAKYPKISYFIWFNGDDDWRVDPSPNSAAA 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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