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Conserved domains on  [gi|254839344|pdb|3GNY|A]
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Chain A, Neutrophil defensin 1

Protein Classification

Defensin_1 domain-containing protein( domain architecture ID 10448289)

Defensin_1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Defensin_1 pfam00323
Mammalian defensin;
2-30 4.07e-05

Mammalian defensin;


:

Pssm-ID: 425607  Cd Length: 29  Bit Score: 34.50  E-value: 4.07e-05
                         10        20
                 ....*....|....*....|....*....
3GNY_A         2 CYCRIPACIAGERRYGTCIYQGRLWAFCC 30
Cdd:pfam00323  1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
 
Name Accession Description Interval E-value
Defensin_1 pfam00323
Mammalian defensin;
2-30 4.07e-05

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 34.50  E-value: 4.07e-05
                         10        20
                 ....*....|....*....|....*....
3GNY_A         2 CYCRIPACIAGERRYGTCIYQGRLWAFCC 30
Cdd:pfam00323  1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
DEFSN smart00048
Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped ...
 2-30 3.89e-04

Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped viruses by forming multimeric membrane-spanning channels.


Pssm-ID: 128363  Cd Length: 29  Bit Score: 32.31  E-value: 3.89e-04
                          10        20
                  ....*....|....*....|....*....
3GNY_A          2 CYCRIPACIAGERRYGTCIYQGRLWAFCC 30
Cdd:smart00048  1 CYCRRRRCPRRERRIGTCRIRGRRYTFCC 29
 
Name Accession Description Interval E-value
Defensin_1 pfam00323
Mammalian defensin;
2-30 4.07e-05

Mammalian defensin;


Pssm-ID: 425607  Cd Length: 29  Bit Score: 34.50  E-value: 4.07e-05
                         10        20
                 ....*....|....*....|....*....
3GNY_A         2 CYCRIPACIAGERRYGTCIYQGRLWAFCC 30
Cdd:pfam00323  1 CYCRRGGCRFPERRSGTCTINGRRYRLCC 29
DEFSN smart00048
Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped ...
 2-30 3.89e-04

Defensin/corticostatin family; Cysteine-rich domains that lyse bacteria, fungi and enveloped viruses by forming multimeric membrane-spanning channels.


Pssm-ID: 128363  Cd Length: 29  Bit Score: 32.31  E-value: 3.89e-04
                          10        20
                  ....*....|....*....|....*....
3GNY_A          2 CYCRIPACIAGERRYGTCIYQGRLWAFCC 30
Cdd:smart00048  1 CYCRRRRCPRRERRIGTCRIRGRRYTFCC 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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