NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1938905942|pdb|4D0M|a]
View 

Chain a, RAB11 FAMILY-INTERACTING PROTEIN 3

Protein Classification

ClyA-like and RBD-FIP domain-containing protein( domain architecture ID 10559615)

ClyA-like and RBD-FIP domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RBD-FIP pfam09457
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ...
 8-48 1.16e-15

FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.


:

Pssm-ID: 462805 [Multi-domain]  Cd Length: 41  Bit Score: 62.36  E-value: 1.16e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
4D0M_a         8 SRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 48
Cdd:pfam09457  1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
 
Name Accession Description Interval E-value
RBD-FIP pfam09457
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ...
 8-48 1.16e-15

FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.


Pssm-ID: 462805 [Multi-domain]  Cd Length: 41  Bit Score: 62.36  E-value: 1.16e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
4D0M_a         8 SRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 48
Cdd:pfam09457  1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
 
Name Accession Description Interval E-value
RBD-FIP pfam09457
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ...
 8-48 1.16e-15

FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.


Pssm-ID: 462805 [Multi-domain]  Cd Length: 41  Bit Score: 62.36  E-value: 1.16e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
4D0M_a         8 SRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILEVK 48
Cdd:pfam09457  1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH