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Conserved domains on  [gi|929984621|pdb|4R4M|C]
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Chain C, cGMP-dependent protein kinase 1

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DD_cGKI super family cl17044
Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I; Cyclic GMP-dependent ...
3-49 2.80e-09

Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I; Cyclic GMP-dependent Protein Kinase I (PKG1 or cGKI) is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. They contain an N-terminal regulatory domain containing a dimerization/docking region and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. It is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. The dimerization/docking (D/D) domain is a leucine/isoleucine zipper that mediates both homodimerization and interaction with isotype-specific G-kinase-anchoring proteins (GKAPs). The D/D domain of the two variants (alpha and beta) differ, allowing their targeting to different subcellular compartments and intracellular substrates.


The actual alignment was detected with superfamily member cd12085:

Pssm-ID: 473057 [Multi-domain]  Cd Length: 48  Bit Score: 46.50  E-value: 2.80e-09
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*..
4R4M_C       3 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKLQSVLP 49
Cdd:cd12085  1 SGSVEELQKLLQAKEERIRELEQLLQQRDEEIQELRSQLDKFQSVFP 47
 
Name Accession Description Interval E-value
DD_cGKI-alpha cd12085
Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I alpha; Cyclic ...
3-49 2.80e-09

Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I alpha; Cyclic GMP-dependent Protein Kinase I (PKG1 or cGKI) is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. They contain an N-terminal regulatory domain containing a dimerization/docking region and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. The dimerization/docking (D/D) domain is a leucine/isoleucine zipper that mediates both homodimerization and interaction with isotype-specific G-kinase-anchoring proteins (GKAPs). The D/D domain of the two variants (alpha and beta) differ, allowing for their targeting to different subcellular compartments and intracellular substrates. cGKI-alpha specifically binds to myosin light chain phosphatase targeting subunit (MYPT1) and the regulator of G-protein signaling-2 (RGS-2). cGKI-alpha activates the phosphatase activity of MYPT1, resulting in vasorelaxation. It increases the activity of RGS-2 toward G proteins, with implications in the downstream signaling for vasoconstrictive agents.


Pssm-ID: 213374 [Multi-domain]  Cd Length: 48  Bit Score: 46.50  E-value: 2.80e-09
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*..
4R4M_C       3 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKLQSVLP 49
Cdd:cd12085  1 SGSVEELQKLLQAKEERIRELEQLLQQRDEEIQELRSQLDKFQSVFP 47
PKcGMP_CC pfam16808
Coiled-coil N-terminus of cGMP-dependent protein kinase; PKcGMP_CC is the N-terminal ...
11-45 3.46e-05

Coiled-coil N-terminus of cGMP-dependent protein kinase; PKcGMP_CC is the N-terminal coiled-coil, dimerization, domain of cGMP-protein kinases.


Pssm-ID: 465276  Cd Length: 35  Bit Score: 35.83  E-value: 3.46e-05
                         10        20        30
                 ....*....|....*....|....*....|....*
4R4M_C        11 KILMLKEERIKELEKRLSEKEEEIQELKRKLHKLQ 45
Cdd:pfam16808  1 KILRLKDERIRELEKRLAEKDEEIQELKSKLDKYQ 35
 
Name Accession Description Interval E-value
DD_cGKI-alpha cd12085
Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I alpha; Cyclic ...
3-49 2.80e-09

Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I alpha; Cyclic GMP-dependent Protein Kinase I (PKG1 or cGKI) is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. They contain an N-terminal regulatory domain containing a dimerization/docking region and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. The dimerization/docking (D/D) domain is a leucine/isoleucine zipper that mediates both homodimerization and interaction with isotype-specific G-kinase-anchoring proteins (GKAPs). The D/D domain of the two variants (alpha and beta) differ, allowing for their targeting to different subcellular compartments and intracellular substrates. cGKI-alpha specifically binds to myosin light chain phosphatase targeting subunit (MYPT1) and the regulator of G-protein signaling-2 (RGS-2). cGKI-alpha activates the phosphatase activity of MYPT1, resulting in vasorelaxation. It increases the activity of RGS-2 toward G proteins, with implications in the downstream signaling for vasoconstrictive agents.


Pssm-ID: 213374 [Multi-domain]  Cd Length: 48  Bit Score: 46.50  E-value: 2.80e-09
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*..
4R4M_C       3 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKLQSVLP 49
Cdd:cd12085  1 SGSVEELQKLLQAKEERIRELEQLLQQRDEEIQELRSQLDKFQSVFP 47
DD_cGKI cd12083
Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I; Cyclic GMP-dependent ...
3-49 3.73e-07

Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I; Cyclic GMP-dependent Protein Kinase I (PKG1 or cGKI) is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. They contain an N-terminal regulatory domain containing a dimerization/docking region and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. It is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. The dimerization/docking (D/D) domain is a leucine/isoleucine zipper that mediates both homodimerization and interaction with isotype-specific G-kinase-anchoring proteins (GKAPs). The D/D domain of the two variants (alpha and beta) differ, allowing their targeting to different subcellular compartments and intracellular substrates.


Pssm-ID: 213373 [Multi-domain]  Cd Length: 48  Bit Score: 41.01  E-value: 3.73e-07
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*..
4R4M_C       3 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKLQSVLP 49
Cdd:cd12083  1 SGLLEEKTEELRKKDERIRELEQELQEKDEEIQELRSQLDKFQSVLP 47
PKcGMP_CC pfam16808
Coiled-coil N-terminus of cGMP-dependent protein kinase; PKcGMP_CC is the N-terminal ...
11-45 3.46e-05

Coiled-coil N-terminus of cGMP-dependent protein kinase; PKcGMP_CC is the N-terminal coiled-coil, dimerization, domain of cGMP-protein kinases.


Pssm-ID: 465276  Cd Length: 35  Bit Score: 35.83  E-value: 3.46e-05
                         10        20        30
                 ....*....|....*....|....*....|....*
4R4M_C        11 KILMLKEERIKELEKRLSEKEEEIQELKRKLHKLQ 45
Cdd:pfam16808  1 KILRLKDERIRELEKRLAEKDEEIQELKSKLDKYQ 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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