NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|918453420|pdb|5ABB|B]
View 

Chain B, PROTEIN TRANSLOCASE SUBUNIT SECE

Protein Classification

preprotein translocase subunit SecE( domain architecture ID 10012582)

preprotein translocase subunit SecE is an essential subunit of the Sec protein translocation channel SecYEG and it clamps together the 2 halves of SecY; may contact the channel plug during translocation

Gene Ontology:  GO:0065002
PubMed:  15546659

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
secE PRK05740
preprotein translocase subunit SecE; Reviewed
 22-113 1.62e-39

preprotein translocase subunit SecE; Reviewed


:

Pssm-ID: 235587  Cd Length: 92  Bit Score: 126.86  E-value: 1.62e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ABB_B        22 NYLYRDIMLPLRALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLD 101
Cdd:PRK05740   1 NYYLREQSLPVRALAVVVLIAAAGGVALLTAKGKAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLD 80

                         90
                 ....*....|..
5ABB_B       102 GILVRLVSFITG 113
Cdd:PRK05740  81 SILVWLISFITG 92
 
Name Accession Description Interval E-value
secE PRK05740
preprotein translocase subunit SecE; Reviewed
 22-113 1.62e-39

preprotein translocase subunit SecE; Reviewed


Pssm-ID: 235587  Cd Length: 92  Bit Score: 126.86  E-value: 1.62e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ABB_B        22 NYLYRDIMLPLRALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLD 101
Cdd:PRK05740   1 NYYLREQSLPVRALAVVVLIAAAGGVALLTAKGKAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLD 80

                         90
                 ....*....|..
5ABB_B       102 GILVRLVSFITG 113
Cdd:PRK05740  81 SILVWLISFITG 92
SecE COG0690
Preprotein translocase subunit SecE [Intracellular trafficking, secretion, and vesicular ...
 51-113 6.84e-21

Preprotein translocase subunit SecE [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440454  Cd Length: 68  Bit Score: 79.10  E-value: 6.84e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
5ABB_B       51 TTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITG 113
Cdd:COG0690   6 TGKGKKIVKFFKEVRAELKKVVWPTRKELIQTTLVVLVFVLIFALFLWLVDLLFGWLVSLILG 68
SecE pfam00584
SecE/Sec61-gamma subunits of protein translocation complex; SecE is part of the SecYEG complex ...
 58-112 1.02e-14

SecE/Sec61-gamma subunits of protein translocation complex; SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex.


Pssm-ID: 459858  Cd Length: 55  Bit Score: 62.83  E-value: 1.02e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
5ABB_B         58 VAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFIT 112
Cdd:pfam00584   1 KKFFKEVKAELKKVTWPTRKELLKYTVVVLVFVVIMGLFLFLVDLGFSILINLLL 55
secE_bact TIGR00964
preprotein translocase, SecE subunit, bacterial; This model represents exclusively the ...
 58-111 2.20e-11

preprotein translocase, SecE subunit, bacterial; This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273367  Cd Length: 55  Bit Score: 54.53  E-value: 2.20e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
5ABB_B         58 VAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFI 111
Cdd:TIGR00964   2 FKFFKEVKAELKKVVWPSRKELITYTIVVIVFVLFFSLFLFGIDYVFGKLISLI 55
 
Name Accession Description Interval E-value
secE PRK05740
preprotein translocase subunit SecE; Reviewed
 22-113 1.62e-39

preprotein translocase subunit SecE; Reviewed


Pssm-ID: 235587  Cd Length: 92  Bit Score: 126.86  E-value: 1.62e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ABB_B        22 NYLYRDIMLPLRALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLD 101
Cdd:PRK05740   1 NYYLREQSLPVRALAVVVLIAAAGGVALLTAKGKAFFAFAKESRTEVRKVVWPTRQETLQTTLIVIAVVIVMALILWGLD 80

                         90
                 ....*....|..
5ABB_B       102 GILVRLVSFITG 113
Cdd:PRK05740  81 SILVWLISFITG 92
SecE COG0690
Preprotein translocase subunit SecE [Intracellular trafficking, secretion, and vesicular ...
 51-113 6.84e-21

Preprotein translocase subunit SecE [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440454  Cd Length: 68  Bit Score: 79.10  E-value: 6.84e-21
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
5ABB_B       51 TTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITG 113
Cdd:COG0690   6 TGKGKKIVKFFKEVRAELKKVVWPTRKELIQTTLVVLVFVLIFALFLWLVDLLFGWLVSLILG 68
SecE pfam00584
SecE/Sec61-gamma subunits of protein translocation complex; SecE is part of the SecYEG complex ...
 58-112 1.02e-14

SecE/Sec61-gamma subunits of protein translocation complex; SecE is part of the SecYEG complex in bacteria which translocates proteins from the cytoplasm. In eukaryotes the complex, made from Sec61-gamma and Sec61-alpha translocates protein from the cytoplasm to the ER. Archaea have a similar complex.


Pssm-ID: 459858  Cd Length: 55  Bit Score: 62.83  E-value: 1.02e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
5ABB_B         58 VAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFIT 112
Cdd:pfam00584   1 KKFFKEVKAELKKVTWPTRKELLKYTVVVLVFVVIMGLFLFLVDLGFSILINLLL 55
secE PRK07597
preprotein translocase subunit SecE; Reviewed
 52-111 5.66e-12

preprotein translocase subunit SecE; Reviewed


Pssm-ID: 236066  Cd Length: 64  Bit Score: 56.08  E-value: 5.66e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
5ABB_B        52 TKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFI 111
Cdd:PRK07597   5 SKMKKLKKFFKDVKAELKKVTWPTRKELVRSTIVVLVFVAFFALFFYLVDLLFSKLISLL 64
secE_bact TIGR00964
preprotein translocase, SecE subunit, bacterial; This model represents exclusively the ...
 58-111 2.20e-11

preprotein translocase, SecE subunit, bacterial; This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273367  Cd Length: 55  Bit Score: 54.53  E-value: 2.20e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
5ABB_B         58 VAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFI 111
Cdd:TIGR00964   2 FKFFKEVKAELKKVVWPSRKELITYTIVVIVFVLFFSLFLFGIDYVFGKLISLI 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH