NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1938944833|pdb|5ND8|n]
View 

Chain n, 30S ribosomal protein S14 type Z

Protein Classification

30S ribosomal protein S14( domain architecture ID 10012995)

30S ribosomal protein S14 type Z is located in the peptidyl transferase center and involved in assembly of the 30S ribosome subunit

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-61 3.16e-35

type Z 30S ribosomal protein S14;


:

Pssm-ID: 181216  Cd Length: 61  Bit Score: 112.66  E-value: 3.16e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
5ND8_n        1 MAKTSMVAKQQKKQKYAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW 61
Cdd:PRK08061  1 MAKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
 
Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-61 3.16e-35

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 112.66  E-value: 3.16e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
5ND8_n        1 MAKTSMVAKQQKKQKYAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW 61
Cdd:PRK08061  1 MAKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-61 1.73e-33

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 108.17  E-value: 1.73e-33
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|.
5ND8_n       1 MAKTSMVAKQQKKQKyAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW 61
Cdd:COG0199  1 MAKKSMIARNKKRPK-PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 9-60 2.37e-22

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 80.14  E-value: 2.37e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
5ND8_n         9 KQQKKQKYA--VREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKAS 60
Cdd:pfam00253  1 KLQKLPRNSspTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
 
Name Accession Description Interval E-value
rpsN PRK08061
type Z 30S ribosomal protein S14;
1-61 3.16e-35

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 112.66  E-value: 3.16e-35
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
5ND8_n        1 MAKTSMVAKQQKKQKYAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW 61
Cdd:PRK08061  1 MAKKSLIAKAKRKPKFKVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 1-61 1.73e-33

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 108.17  E-value: 1.73e-33
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|.
5ND8_n       1 MAKTSMVAKQQKKQKyAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW 61
Cdd:COG0199  1 MAKKSMIARNKKRPK-PVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 9-60 2.37e-22

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 80.14  E-value: 2.37e-22
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
5ND8_n         9 KQQKKQKYA--VREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKAS 60
Cdd:pfam00253  1 KLQKLPRNSspTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKAS 54
rpsN PRK08881
30S ribosomal protein S14; Reviewed
 1-61 1.67e-21

30S ribosomal protein S14; Reviewed


Pssm-ID: 181574  Cd Length: 101  Bit Score: 79.42  E-value: 1.67e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5ND8_n         1 MAKTSMVAKQQKKQ----KYA------------------------------------VREYTRCERCGRPHSVYRKFKLC 40
Cdd:PRK08881   1 MAKKSMIAREKKRKklvaKYAakraelkaiisdpnlsdeeryearlklqklprnsspTRLRNRCELTGRPRGYYRKFGLS 80

                         90       100
                 ....*....|....*....|.
5ND8_n        41 RICFRELAYKGQIPGVRKASW 61
Cdd:PRK08881  81 RIKLRELAHRGEIPGVVKASW 101
rpsN PRK06911
30S ribosomal protein S14; Reviewed
 18-61 1.56e-12

30S ribosomal protein S14; Reviewed


Pssm-ID: 180742 [Multi-domain]  Cd Length: 100  Bit Score: 56.61  E-value: 1.56e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
5ND8_n        18 VREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW 61
Cdd:PRK06911  57 VRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100
rps14 CHL00074
ribosomal protein S14
 18-61 1.22e-09

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 49.03  E-value: 1.22e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
5ND8_n        18 VREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKASW 61
Cdd:CHL00074  57 TRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 23-50 1.28e-03

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 32.56  E-value: 1.28e-03
                        10        20        30
                ....*....|....*....|....*....|
5ND8_n       23 RCERCGRPHSVYRKF--KLCRICFRELAYK 50
Cdd:PRK05766 16 ECQRCGRKQGLIRKYglYLCRQCFREVAPK 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH