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Conserved domains on  [gi|157837111|pdb|6MSI|A]
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Chain A, TYPE III ANTIFREEZE PROTEIN ISOFORM HPLC 12

Protein Classification

flagella basal body P-ring formation protein FlgA( domain architecture ID 10184334)

flagella basal body P-ring formation protein FlgA is a periplasmic protein essential for flagellar P-ring assembly

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Antifreeze_III cd11617
Type III antifreeze protein, may be specific to the Zoarcoidei; Antifreeze protein III ...
 4-65 1.79e-27

Type III antifreeze protein, may be specific to the Zoarcoidei; Antifreeze protein III inhibits the growth of ice crystals and protects fish from cold damage in sub-freezing temperatures.


:

Pssm-ID: 212162  Cd Length: 62  Bit Score: 93.68  E-value: 1.79e-27
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|..
6MSI_A       4 ASVVANQLIPINTRLTLVMMRSEVVTPVGIPAEDIPALVSMQVNRAVPLGTTLMPDMVKGYA 65
Cdd:cd11617  1 ASVVATQLIPINTALTLVMMKAKVVTPMGIPAEEIPRLVGMQVNRAVPLGTTLMPDMVKGYA 62
 
Name Accession Description Interval E-value
Antifreeze_III cd11617
Type III antifreeze protein, may be specific to the Zoarcoidei; Antifreeze protein III ...
 4-65 1.79e-27

Type III antifreeze protein, may be specific to the Zoarcoidei; Antifreeze protein III inhibits the growth of ice crystals and protects fish from cold damage in sub-freezing temperatures.


Pssm-ID: 212162  Cd Length: 62  Bit Score: 93.68  E-value: 1.79e-27
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|..
6MSI_A       4 ASVVANQLIPINTRLTLVMMRSEVVTPVGIPAEDIPALVSMQVNRAVPLGTTLMPDMVKGYA 65
Cdd:cd11617  1 ASVVATQLIPINTALTLVMMKAKVVTPMGIPAEEIPRLVGMQVNRAVPLGTTLMPDMVKGYA 62
 
Name Accession Description Interval E-value
Antifreeze_III cd11617
Type III antifreeze protein, may be specific to the Zoarcoidei; Antifreeze protein III ...
 4-65 1.79e-27

Type III antifreeze protein, may be specific to the Zoarcoidei; Antifreeze protein III inhibits the growth of ice crystals and protects fish from cold damage in sub-freezing temperatures.


Pssm-ID: 212162  Cd Length: 62  Bit Score: 93.68  E-value: 1.79e-27
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|..
6MSI_A       4 ASVVANQLIPINTRLTLVMMRSEVVTPVGIPAEDIPALVSMQVNRAVPLGTTLMPDMVKGYA 65
Cdd:cd11617  1 ASVVATQLIPINTALTLVMMKAKVVTPMGIPAEEIPRLVGMQVNRAVPLGTTLMPDMVKGYA 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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