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Conserved domains on  [gi|2038648538|pdb|6ZV6|b]
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Chain b, 40S ribosomal protein S27

Protein Classification

40S ribosomal protein S27( domain architecture ID 10010701)

40S ribosomal protein S27 is a zinc finger protein that is thought to function in DNA repair and oncogenesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00209 PLN00209
ribosomal protein S27; Provisional
 6-82 3.64e-42

ribosomal protein S27; Provisional


:

Pssm-ID: 165774  Cd Length: 86  Bit Score: 132.24  E-value: 3.64e-42
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
6ZV6_b        6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:PLN00209  8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
 
Name Accession Description Interval E-value
PLN00209 PLN00209
ribosomal protein S27; Provisional
 6-82 3.64e-42

ribosomal protein S27; Provisional


Pssm-ID: 165774  Cd Length: 86  Bit Score: 132.24  E-value: 3.64e-42
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
6ZV6_b        6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:PLN00209  8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
Ribosomal_S27e pfam01667
Ribosomal protein S27;
28-82 4.70e-28

Ribosomal protein S27;


Pssm-ID: 279935  Cd Length: 55  Bit Score: 95.60  E-value: 4.70e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
6ZV6_b        28 PNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:pfam01667  1 PNSYFLDVKCPGCGNITTVFSHAQTVVKCIICGKVLCEPTGGKAKLKAGISFRRK 55
RPS27A COG2051
Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 24-73 7.26e-14

Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S27E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441654  Cd Length: 60  Bit Score: 59.90  E-value: 7.26e-14
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|
6ZV6_b      24 LVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARL 73
Cdd:COG2051  4 LIPEPRSKFLKVKCPDCGNEQIVFSHASTVVRCLVCGTTLAEPTGGKAKI 53
 
Name Accession Description Interval E-value
PLN00209 PLN00209
ribosomal protein S27; Provisional
 6-82 3.64e-42

ribosomal protein S27; Provisional


Pssm-ID: 165774  Cd Length: 86  Bit Score: 132.24  E-value: 3.64e-42
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
6ZV6_b        6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:PLN00209  8 DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGSCQTVLCQPTGGKARLTEGCSFRKK 84
PTZ00083 PTZ00083
40S ribosomal protein S27; Provisional
 6-82 4.86e-41

40S ribosomal protein S27; Provisional


Pssm-ID: 185434  Cd Length: 85  Bit Score: 129.40  E-value: 4.86e-41
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
6ZV6_b        6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:PTZ00083  7 DLLYPDPESEARKHKLKRLVQGPNSYFMDVKCPGCSQITTVFSHAQTVVLCGGCSSQLCQPTGGKAKLTEGCSFRRK 83
Ribosomal_S27e pfam01667
Ribosomal protein S27;
28-82 4.70e-28

Ribosomal protein S27;


Pssm-ID: 279935  Cd Length: 55  Bit Score: 95.60  E-value: 4.70e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
6ZV6_b        28 PNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
Cdd:pfam01667  1 PNSYFLDVKCPGCGNITTVFSHAQTVVKCIICGKVLCEPTGGKAKLKAGISFRRK 55
RPS27A COG2051
Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 24-73 7.26e-14

Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]; Ribosomal protein S27E is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441654  Cd Length: 60  Bit Score: 59.90  E-value: 7.26e-14
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|
6ZV6_b      24 LVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARL 73
Cdd:COG2051  4 LIPEPRSKFLKVKCPDCGNEQIVFSHASTVVRCLVCGTTLAEPTGGKAKI 53
rps27e PRK00415
30S ribosomal protein S27e; Reviewed
 24-73 1.30e-12

30S ribosomal protein S27e; Reviewed


Pssm-ID: 179013  Cd Length: 59  Bit Score: 56.45  E-value: 1.30e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
6ZV6_b       24 LVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARL 73
Cdd:PRK00415  1 LIPQPRSRFLKVKCPDCGNEQVVFSHASTVVRCLVCGKTLAEPTGGKAKI 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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