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Conserved domains on  [gi|2095360588|pdb|7OIC|j]
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Chain j, 39S ribosomal protein L52, mitochondrial

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRPL52 pfam18699
Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins ...
 24-113 3.24e-39

Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins mL52 which is found in the 39S subunit. The mL52 has no homologs in yeast.


:

Pssm-ID: 465836  Cd Length: 91  Bit Score: 126.54  E-value: 3.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7OIC_j         24 GGQWRLQQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAERETFARRVVLLSQEMDAGLQAWQLRQ-QKLQEEQ 102
Cdd:pfam18699   1 GRKWRWKKGLPRNPNEYGPLTDLPDFSFADGRPAPVTSGQLKRKLKQIELAKKIVKLSSEVDEAEERYKRKQeEEEEEIQ 80

                          90
                  ....*....|.
7OIC_j        103 RKQENALKPKG 113
Cdd:pfam18699  81 KIIDNKLKPKG 91
 
Name Accession Description Interval E-value
MRPL52 pfam18699
Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins ...
 24-113 3.24e-39

Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins mL52 which is found in the 39S subunit. The mL52 has no homologs in yeast.


Pssm-ID: 465836  Cd Length: 91  Bit Score: 126.54  E-value: 3.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7OIC_j         24 GGQWRLQQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAERETFARRVVLLSQEMDAGLQAWQLRQ-QKLQEEQ 102
Cdd:pfam18699   1 GRKWRWKKGLPRNPNEYGPLTDLPDFSFADGRPAPVTSGQLKRKLKQIELAKKIVKLSSEVDEAEERYKRKQeEEEEEIQ 80

                          90
                  ....*....|.
7OIC_j        103 RKQENALKPKG 113
Cdd:pfam18699  81 KIIDNKLKPKG 91
 
Name Accession Description Interval E-value
MRPL52 pfam18699
Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins ...
 24-113 3.24e-39

Mitoribosomal protein mL52; Members of this family include the mamalian mitoribosomal proteins mL52 which is found in the 39S subunit. The mL52 has no homologs in yeast.


Pssm-ID: 465836  Cd Length: 91  Bit Score: 126.54  E-value: 3.24e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7OIC_j         24 GGQWRLQQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAERETFARRVVLLSQEMDAGLQAWQLRQ-QKLQEEQ 102
Cdd:pfam18699   1 GRKWRWKKGLPRNPNEYGPLTDLPDFSFADGRPAPVTSGQLKRKLKQIELAKKIVKLSSEVDEAEERYKRKQeEEEEEIQ 80

                          90
                  ....*....|.
7OIC_j        103 RKQENALKPKG 113
Cdd:pfam18699  81 KIIDNKLKPKG 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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