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Conserved domains on  [gi|2812886943|pdb|9GRD|B]
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Protein Classification

xylose isomerase( domain architecture ID 17620137)

xylose isomerase catalyzes the interconversion of D-xylose to D-xylulose

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
xylA_Arthro TIGR02631
xylose isomerase, Arthrobacter type; This model describes a D-xylose isomerase that is also ...
3-384 0e+00

xylose isomerase, Arthrobacter type; This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.


:

Pssm-ID: 131679  Cd Length: 382  Bit Score: 707.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B          3 YQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVESVRRLAELGAHGVTFHDDDLIPFGSSDSEREEHVKRFRQALDDT 82
Cdd:TIGR02631   1 YQPTPEDRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDET 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B         83 GMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAF 162
Cdd:TIGR02631  81 GLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREAL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        163 DLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLF 242
Cdd:TIGR02631 161 NLLAAYAEDQGYGLRFALEPKPNEPRGDILLPTVGHALAFIETLERPELFGLNPETGHEQMAGLNFTHGIAQALWAGKLF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        243 HIDLNGQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKERAAAFRA 322
Cdd:TIGR02631 241 HIDLNGQRGIKFDQDLRFGHGDLKAAFFLVDLLESGGYQGPRHFDYKPSRTEDYDGVWASAKGCMRMYLILKERAEAFRA 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
9GRD_B        323 DPEVQEALRASRLDELARPTAADGLQALLDDRSAFEEFDVDAAAARGMAFERLDQLAMDHLL 384
Cdd:TIGR02631 321 DPEVQEALAASYVDELAAPTLNGGYADLLADRSAFAEFDAEAAAARGYAFERLDQLAIEHLL 382
 
Name Accession Description Interval E-value
xylA_Arthro TIGR02631
xylose isomerase, Arthrobacter type; This model describes a D-xylose isomerase that is also ...
3-384 0e+00

xylose isomerase, Arthrobacter type; This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.


Pssm-ID: 131679  Cd Length: 382  Bit Score: 707.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B          3 YQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVESVRRLAELGAHGVTFHDDDLIPFGSSDSEREEHVKRFRQALDDT 82
Cdd:TIGR02631   1 YQPTPEDRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDET 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B         83 GMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAF 162
Cdd:TIGR02631  81 GLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREAL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        163 DLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLF 242
Cdd:TIGR02631 161 NLLAAYAEDQGYGLRFALEPKPNEPRGDILLPTVGHALAFIETLERPELFGLNPETGHEQMAGLNFTHGIAQALWAGKLF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        243 HIDLNGQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKERAAAFRA 322
Cdd:TIGR02631 241 HIDLNGQRGIKFDQDLRFGHGDLKAAFFLVDLLESGGYQGPRHFDYKPSRTEDYDGVWASAKGCMRMYLILKERAEAFRA 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
9GRD_B        323 DPEVQEALRASRLDELARPTAADGLQALLDDRSAFEEFDVDAAAARGMAFERLDQLAMDHLL 384
Cdd:TIGR02631 321 DPEVQEALAASYVDELAAPTLNGGYADLLADRSAFAEFDAEAAAARGYAFERLDQLAIEHLL 382
XylA COG2115
Xylose isomerase [Carbohydrate transport and metabolism];
1-385 3.10e-170

Xylose isomerase [Carbohydrate transport and metabolism];


Pssm-ID: 441718 [Multi-domain]  Cd Length: 439  Bit Score: 482.35  E-value: 3.10e-170
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        1 MNYQPTPEDRFTFGLW-TVGWQGRDPFGDATR-----RALDPVE--------SVRRLAELGAHGVTFHDDDLIPFGSSDS 66
Cdd:COG2115  34 AGKTMKEHLRFAVAYWhTFCWTGSDPFGGGTRerpwdPGGDPMErakakadaAFEFFTKLGAPYYCFHDRDLAPEGATLA 113
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B       67 ERE----EHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREG 142
Cdd:COG2115 114 ERNknldEIVDYFKEKQKETGVKLLWGTANLFSHPRFMNGAATNPDPDVFAYAAAQVKKALDATKELGGENYVFWGGREG 193
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B      143 AESGGAKDVRDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQ 222
Cdd:COG2115 194 YETLLNTDMKRELDHLARFLHMAVDYAKKIGFKGQFLIEPKPKEPTKHQYDFDVATVIGFLRTYGLEKDFKLNIEVNHAT 273
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B      223 MAGLNFPHGIAQALWAGKLFHIDLN-GQNGIKYDQDlRFGAGDLRAAFWLVDLLESAG-YSGPRHFDFKPPRTE-DFDGV 299
Cdd:COG2115 274 LAGHTFEHELAVAADAGKLGSIDANrGDYQLGWDTD-QFPTNVYETTLAMYEILENGGfTTGGLNFDAKVRRTSfDPEDL 352
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B      300 WASAAGCMRNYLILKERAAAFRADPEVQEAL---RASRLDELARPTAADGLQ-ALLDDRSAFEEFDVdaaAARGMAFERL 375
Cdd:COG2115 353 FYAHIGGMDTFARGLKIAAAILEDGELEALLaerYASWDSGIGKDILAGKLSlEDLAAYALAEGFDP---APRSGRQERL 429
                       410
                ....*....|
9GRD_B      376 DQLAMDHLLG 385
Cdd:COG2115 430 ENLVNEYLLG 439
PRK05474 PRK05474
xylose isomerase; Provisional
10-334 1.80e-32

xylose isomerase; Provisional


Pssm-ID: 235487 [Multi-domain]  Cd Length: 437  Bit Score: 126.48  E-value: 1.80e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        10 RFTFGLW-TVGWQGRDPFGDATR-----RALDPVESVRRLAE--------LGAHGVTFHDDDLIPFGSSDSEREEH---- 71
Cdd:PRK05474  41 RFAVAYWhTFCWPGADPFGGGTFqrpwdQPGDALDLAKAKADaafefftkLGVPYYCFHDVDVAPEGASLKEYNANldei 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        72 VKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDV 151
Cdd:PRK05474 121 VDYLKEKQAETGVKLLWGTANLFSNPRYMAGAATNPDPDVFAYAAAQVKTALDATKRLGGENYVFWGGREGYETLLNTDL 200
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B       152 RDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEP---RGDILLPTVghaLAFIERlerpelYG------VNPEVGHEQ 222
Cdd:PRK05474 201 KREREQLARFLQMVVDYKHKIGFKGTFLIEPKPQEPtkhQYDYDAATV---YGFLKQ------YGlekefkLNIEANHAT 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B       223 MAGLNFPHGIAQALWAGKLFHIDLN-G--QNGIKYDQ---DLRfgagDLRAAFWLVdlLESAGY-SGPRHFDFKPPR--T 293
Cdd:PRK05474 272 LAGHTFEHELAVARALGILGSIDANrGdyQLGWDTDQfpnNVY----ETTLAMYEI--LKAGGFtTGGLNFDAKVRRqsT 345
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
9GRD_B       294 EDFDGVWASAAGcMRNYLILKERAAAFRADpEVQEALRASR 334
Cdd:PRK05474 346 DPEDLFYAHIGG-MDTFARGLKVAAKMIED-GVLEKLVAER 384
AP_endonuc_2 pfam01261
Xylose isomerase-like TIM barrel; This TIM alpha/beta barrel structure is found in xylose ...
40-310 4.02e-25

Xylose isomerase-like TIM barrel; This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.


Pssm-ID: 426164 [Multi-domain]  Cd Length: 248  Bit Score: 102.45  E-value: 4.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B         40 VRRLAELGAHGVTFHDDDLIPFGSSDSEREEhvkrFRQALDDTGMKVPMattnlftHPVFKDGGFTANDRDVRRYALRKT 119
Cdd:pfam01261   1 LAAAAELGFDGVELFTRRWFRPPLSDEEAEE----LKAALKEHGLEIVV-------HAPYLGDNLASPDEEEREKAIDRL 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        120 IRNIDLAVELGAETYVAWGGregaeSGGAKDVRDALDRMKEAFDLLGEYVTSQGydIRFAIEPKPNEPRGDilLPTVGHA 199
Cdd:pfam01261  70 KRAIELAAALGAKLVVFHPG-----SDLGDDPEEALARLAESLRELADLAEREG--VRLALEPLAGKGTNV--GNTFEEA 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        200 LAFIERLERPELyGVNPEVGHEQMAGlNFPHgIAQALWAGKLFHIDLN---GQNGIKYDQDLRFGAG--DLRAAFwlvDL 274
Cdd:pfam01261 141 LEIIDEVDSPNV-GVCLDTGHLFAAG-DGDL-FELRLGDRYIGHVHLKdskNPLGSGPDRHVPIGEGviDFEALF---RA 214
                         250       260       270
                  ....*....|....*....|....*....|....*.
9GRD_B        275 LESAGYSGPrhFDFKPPRTEDFDGVWASAAGCMRNY 310
Cdd:pfam01261 215 LKEIGYDGP--LSLETFNDGPPEEGAREGLEWLREL 248
 
Name Accession Description Interval E-value
xylA_Arthro TIGR02631
xylose isomerase, Arthrobacter type; This model describes a D-xylose isomerase that is also ...
3-384 0e+00

xylose isomerase, Arthrobacter type; This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.


Pssm-ID: 131679  Cd Length: 382  Bit Score: 707.38  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B          3 YQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVESVRRLAELGAHGVTFHDDDLIPFGSSDSEREEHVKRFRQALDDT 82
Cdd:TIGR02631   1 YQPTPEDRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDET 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B         83 GMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAF 162
Cdd:TIGR02631  81 GLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREAL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        163 DLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLF 242
Cdd:TIGR02631 161 NLLAAYAEDQGYGLRFALEPKPNEPRGDILLPTVGHALAFIETLERPELFGLNPETGHEQMAGLNFTHGIAQALWAGKLF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        243 HIDLNGQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKERAAAFRA 322
Cdd:TIGR02631 241 HIDLNGQRGIKFDQDLRFGHGDLKAAFFLVDLLESGGYQGPRHFDYKPSRTEDYDGVWASAKGCMRMYLILKERAEAFRA 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
9GRD_B        323 DPEVQEALRASRLDELARPTAADGLQALLDDRSAFEEFDVDAAAARGMAFERLDQLAMDHLL 384
Cdd:TIGR02631 321 DPEVQEALAASYVDELAAPTLNGGYADLLADRSAFAEFDAEAAAARGYAFERLDQLAIEHLL 382
XylA COG2115
Xylose isomerase [Carbohydrate transport and metabolism];
1-385 3.10e-170

Xylose isomerase [Carbohydrate transport and metabolism];


Pssm-ID: 441718 [Multi-domain]  Cd Length: 439  Bit Score: 482.35  E-value: 3.10e-170
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        1 MNYQPTPEDRFTFGLW-TVGWQGRDPFGDATR-----RALDPVE--------SVRRLAELGAHGVTFHDDDLIPFGSSDS 66
Cdd:COG2115  34 AGKTMKEHLRFAVAYWhTFCWTGSDPFGGGTRerpwdPGGDPMErakakadaAFEFFTKLGAPYYCFHDRDLAPEGATLA 113
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B       67 ERE----EHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREG 142
Cdd:COG2115 114 ERNknldEIVDYFKEKQKETGVKLLWGTANLFSHPRFMNGAATNPDPDVFAYAAAQVKKALDATKELGGENYVFWGGREG 193
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B      143 AESGGAKDVRDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQ 222
Cdd:COG2115 194 YETLLNTDMKRELDHLARFLHMAVDYAKKIGFKGQFLIEPKPKEPTKHQYDFDVATVIGFLRTYGLEKDFKLNIEVNHAT 273
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B      223 MAGLNFPHGIAQALWAGKLFHIDLN-GQNGIKYDQDlRFGAGDLRAAFWLVDLLESAG-YSGPRHFDFKPPRTE-DFDGV 299
Cdd:COG2115 274 LAGHTFEHELAVAADAGKLGSIDANrGDYQLGWDTD-QFPTNVYETTLAMYEILENGGfTTGGLNFDAKVRRTSfDPEDL 352
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B      300 WASAAGCMRNYLILKERAAAFRADPEVQEAL---RASRLDELARPTAADGLQ-ALLDDRSAFEEFDVdaaAARGMAFERL 375
Cdd:COG2115 353 FYAHIGGMDTFARGLKIAAAILEDGELEALLaerYASWDSGIGKDILAGKLSlEDLAAYALAEGFDP---APRSGRQERL 429
                       410
                ....*....|
9GRD_B      376 DQLAMDHLLG 385
Cdd:COG2115 430 ENLVNEYLLG 439
PRK05474 PRK05474
xylose isomerase; Provisional
10-334 1.80e-32

xylose isomerase; Provisional


Pssm-ID: 235487 [Multi-domain]  Cd Length: 437  Bit Score: 126.48  E-value: 1.80e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        10 RFTFGLW-TVGWQGRDPFGDATR-----RALDPVESVRRLAE--------LGAHGVTFHDDDLIPFGSSDSEREEH---- 71
Cdd:PRK05474  41 RFAVAYWhTFCWPGADPFGGGTFqrpwdQPGDALDLAKAKADaafefftkLGVPYYCFHDVDVAPEGASLKEYNANldei 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        72 VKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDV 151
Cdd:PRK05474 121 VDYLKEKQAETGVKLLWGTANLFSNPRYMAGAATNPDPDVFAYAAAQVKTALDATKRLGGENYVFWGGREGYETLLNTDL 200
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B       152 RDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEP---RGDILLPTVghaLAFIERlerpelYG------VNPEVGHEQ 222
Cdd:PRK05474 201 KREREQLARFLQMVVDYKHKIGFKGTFLIEPKPQEPtkhQYDYDAATV---YGFLKQ------YGlekefkLNIEANHAT 271
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B       223 MAGLNFPHGIAQALWAGKLFHIDLN-G--QNGIKYDQ---DLRfgagDLRAAFWLVdlLESAGY-SGPRHFDFKPPR--T 293
Cdd:PRK05474 272 LAGHTFEHELAVARALGILGSIDANrGdyQLGWDTDQfpnNVY----ETTLAMYEI--LKAGGFtTGGLNFDAKVRRqsT 345
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
9GRD_B       294 EDFDGVWASAAGcMRNYLILKERAAAFRADpEVQEALRASR 334
Cdd:PRK05474 346 DPEDLFYAHIGG-MDTFARGLKVAAKMIED-GVLEKLVAER 384
PRK12465 PRK12465
xylose isomerase; Provisional
10-256 9.76e-26

xylose isomerase; Provisional


Pssm-ID: 183542  Cd Length: 445  Bit Score: 107.81  E-value: 9.76e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        10 RFTFGLW-TVGWQGRDPFGDATR--------RALDPVESVRRLA-----ELGAHGVTFHDDDLIPFGSSDSEREEHVKRF 75
Cdd:PRK12465  51 RFAVAYWhSFCGNGADPFGPGTRaypwdvgnTALARAEAKSDAAfefftKLGVPYYCFHDIDLAPDADDIGEYESNLKHM 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        76 ----RQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDV 151
Cdd:PRK12465 131 vgiaKQRQADTGIKLLWGTANLFSHPRYMNGASTNPDFNVVARAAVQVKAAIDATVELGGENYVFWGGREGYACLHNTQM 210
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B       152 RDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHG 231
Cdd:PRK12465 211 KREQDNMARFLTLARDYGRSIGFKGNFLIEPKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHD 290
                        250       260
                 ....*....|....*....|....*...
9GRD_B       232 IAQALWAGKLFHIDL---NGQNGIKYDQ 256
Cdd:PRK12465 291 LQVASDAGLLGSIDAnrgNPQNGWDTDQ 318
AP_endonuc_2 pfam01261
Xylose isomerase-like TIM barrel; This TIM alpha/beta barrel structure is found in xylose ...
40-310 4.02e-25

Xylose isomerase-like TIM barrel; This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.


Pssm-ID: 426164 [Multi-domain]  Cd Length: 248  Bit Score: 102.45  E-value: 4.02e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B         40 VRRLAELGAHGVTFHDDDLIPFGSSDSEREEhvkrFRQALDDTGMKVPMattnlftHPVFKDGGFTANDRDVRRYALRKT 119
Cdd:pfam01261   1 LAAAAELGFDGVELFTRRWFRPPLSDEEAEE----LKAALKEHGLEIVV-------HAPYLGDNLASPDEEEREKAIDRL 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        120 IRNIDLAVELGAETYVAWGGregaeSGGAKDVRDALDRMKEAFDLLGEYVTSQGydIRFAIEPKPNEPRGDilLPTVGHA 199
Cdd:pfam01261  70 KRAIELAAALGAKLVVFHPG-----SDLGDDPEEALARLAESLRELADLAEREG--VRLALEPLAGKGTNV--GNTFEEA 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        200 LAFIERLERPELyGVNPEVGHEQMAGlNFPHgIAQALWAGKLFHIDLN---GQNGIKYDQDLRFGAG--DLRAAFwlvDL 274
Cdd:pfam01261 141 LEIIDEVDSPNV-GVCLDTGHLFAAG-DGDL-FELRLGDRYIGHVHLKdskNPLGSGPDRHVPIGEGviDFEALF---RA 214
                         250       260       270
                  ....*....|....*....|....*....|....*.
9GRD_B        275 LESAGYSGPrhFDFKPPRTEDFDGVWASAAGCMRNY 310
Cdd:pfam01261 215 LKEIGYDGP--LSLETFNDGPPEEGAREGLEWLREL 248
PLN02923 PLN02923
xylose isomerase
10-257 4.39e-22

xylose isomerase


Pssm-ID: 178511  Cd Length: 478  Bit Score: 97.63  E-value: 4.39e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        10 RFTFGLW-TVGWQGRDPFGDATRR-----ALDPVESVRR--------LAELGAHGVTFHDDDLIPFGS----SDSEREEH 71
Cdd:PLN02923  85 RFSVAFWhTFRGTGGDPFGAPTKYwpwedGTNSLAMAKRrmranfefLKKLGVDRWCFHDRDIAPDGKtleeSNANLDEV 164
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B        72 VKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDV 151
Cdd:PLN02923 165 VALAKELQEGTKIRPLWGTAQLFKHPRYMHGAATSSEVGVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQTLLNTDM 244
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B       152 RDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHG 231
Cdd:PLN02923 245 ERELDHLARFLEAAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEFKLNIECNHATLSGHSCHHE 324
                        250       260
                 ....*....|....*....|....*..
9GRD_B       232 IAQALWAGKLFHIDLN-GQNGIKYDQD 257
Cdd:PLN02923 325 LETARINGLLGNIDANtGDAQTGWDTD 351
YcjR COG1082
Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism];
29-283 1.97e-19

Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism];


Pssm-ID: 440699 [Multi-domain]  Cd Length: 254  Bit Score: 86.60  E-value: 1.97e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B       29 ATRRALDPVESVRRLAELGAHGVTFHDDDLipfgssdseREEHVKRFRQALDDTGMKVPMATTNlfthpvfkdGGFTAND 108
Cdd:COG1082   8 YSLPDLDLEEALRAAAELGYDGVELAGGDL---------DEADLAELRAALADHGLEISSLHAP---------GLNLAPD 69
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B      109 RDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAEsggAKDVRDALDRMKEAFDLLGEYVtsQGYDIRFAIEPKPNEpr 188
Cdd:COG1082  70 PEVREAALERLKRAIDLAAELGAKVVVVHPGSPPPP---DLPPEEAWDRLAERLRELAELA--EEAGVTLALENHEGT-- 142
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
9GRD_B      189 gdiLLPTVGHALAFIERLERPELyGVNPEVGHEQMAGLNFPHGIAQAlwAGKLFHIDLngqNGIKYDQDLRFGAG--DLR 266
Cdd:COG1082 143 ---FVNTPEEALRLLEAVDSPNV-GLLLDTGHALLAGEDPVELLRKL--GDRIKHVHL---KDADGDQHLPPGEGdiDFA 213
                       250
                ....*....|....*..
9GRD_B      267 AafwLVDLLESAGYSGP 283
Cdd:COG1082 214 A---ILRALKEAGYDGW 227
 
Blast search parameters
Data Source: Live blast search RID = KU5J21JY013
User Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01   Maximum number of hits: 500

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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