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Conserved domains on  [gi|1239396311|sp|A0A1D6KL43|]
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RecName: Full=Protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic; Flags: Precursor

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14290 super family cl31699
chaperone protein DnaJ; Provisional
 108-167 4.71e-08

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK14290:

Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 51.86  E-value: 4.71e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239396311 108 QKAVCRNCNGSGA-----VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL---VCPVCLGTG 167
Cdd:PRK14290  148 RNAMCPDCSGTGAkngklITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIpeeKCPRCNGTG 215
PRK14293 super family cl36361
molecular chaperone DnaJ;
73-130 2.11e-04

molecular chaperone DnaJ;


The actual alignment was detected with superfamily member PRK14293:

Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 41.13  E-value: 2.11e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1239396311  73 SSRRRCLVCLGAVTLISATGPPNGLAAdamnkagvQKAVCRNCNGSGAVI---CDMCGGTG 130
Cdd:PRK14293  158 TGPTTCSTCGGAGQVRRATRTPFGSFT--------QVSECPTCNGTGQVIedpCDACGGQG 210
 
Name Accession Description Interval E-value
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 108-167 4.71e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 51.86  E-value: 4.71e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239396311 108 QKAVCRNCNGSGA-----VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL---VCPVCLGTG 167
Cdd:PRK14290  148 RNAMCPDCSGTGAkngklITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIpeeKCPRCNGTG 215
DnaJ_zf cd10719
Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of ...
 112-167 2.63e-05

Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.


Pssm-ID: 199908 [Multi-domain]  Cd Length: 65  Bit Score: 40.70  E-value: 2.63e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1239396311 112 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 167
Cdd:cd10719     1 CPTCNGSGAkpgtkpKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIkdpCPKCKGKG 65
DnaJ_CXXCXGXG pfam00684
DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four ...
 112-167 6.63e-05

DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found.


Pssm-ID: 459904 [Multi-domain]  Cd Length: 65  Bit Score: 39.46  E-value: 6.63e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1239396311 112 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 167
Cdd:pfam00684   1 CPTCNGSGAkpgtkpTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKIIkdpCKKCKGKG 65
PRK14293 PRK14293
molecular chaperone DnaJ;
73-130 2.11e-04

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 41.13  E-value: 2.11e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1239396311  73 SSRRRCLVCLGAVTLISATGPPNGLAAdamnkagvQKAVCRNCNGSGAVI---CDMCGGTG 130
Cdd:PRK14293  158 TGPTTCSTCGGAGQVRRATRTPFGSFT--------QVSECPTCNGTGQVIedpCDACGGQG 210
 
Name Accession Description Interval E-value
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 108-167 4.71e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 51.86  E-value: 4.71e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239396311 108 QKAVCRNCNGSGA-----VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKL---VCPVCLGTG 167
Cdd:PRK14290  148 RNAMCPDCSGTGAkngklITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIpeeKCPRCNGTG 215
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 112-167 5.12e-08

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 51.77  E-value: 5.12e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1239396311 112 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14298  144 CSTCSGTGAkpgtspKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIespCPVCSGTG 208
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 110-167 1.43e-07

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 50.47  E-value: 1.43e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1239396311 110 AVCRNCNGSGA------VICDMCGGTG-----KWKALNRKRAKdvyefTECPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14276  147 ATCHTCNGSGAkpgtspVTCGKCHGSGvitvdTQTPLGMMRRQ-----VTCDVCHGTGKEIkepCQTCHGTG 213
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 111-167 1.88e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 46.97  E-value: 1.88e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1239396311 111 VCRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14278  141 LCDRCHGKGTagdskpVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIpdpCHECAGDG 206
PLN03165 PLN03165
chaperone protein dnaJ-related; Provisional
 112-168 2.28e-06

chaperone protein dnaJ-related; Provisional


Pssm-ID: 178709 [Multi-domain]  Cd Length: 111  Bit Score: 44.81  E-value: 2.28e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1239396311 112 CRNCNGSGAVICDMCGGTGkwkALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGL 168
Cdd:PLN03165   44 CFPCSGTGAQVCRFCVGSG---NVTVELGGGEKEVSKCINCDGAGSLTCTTCQGSGI 97
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 112-168 3.22e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 46.52  E-value: 3.22e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1239396311 112 CRNCNGSGA------VICDMCGGTGKWKalnrkRAKDVYEF-TECPNCYGRGKLV---CPVCLGTGL 168
Cdd:PRK14286  153 CVDCNGSGAskgsspTTCPDCGGSGQIR-----RTQGFFSVaTTCPTCRGKGTVIsnpCKTCGGQGL 214
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 112-167 3.55e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 46.29  E-value: 3.55e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239396311 112 CRNCNGSGA------VICDMCGGTGkwkalnRKRAKDVYeFT---ECPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK10767  145 CDTCHGSGAkpgtspKTCPTCHGAG------QVRMQQGF-FTvqqTCPTCHGRGKIIkdpCKKCHGQG 205
PRK14293 PRK14293
molecular chaperone DnaJ;
111-167 3.94e-06

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 46.14  E-value: 3.94e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1239396311 111 VCRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14293  145 TCETCRGSGAkpgtgpTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIedpCDACGGQG 210
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 106-168 7.98e-06

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 45.18  E-value: 7.98e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239396311 106 GVQKA-------VCRNCNGSGAV-----ICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGL 168
Cdd:PRK14281  153 GVEKTlkikkqvPCKECNGTGSKtgateTCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVkdrCPACYGEGI 230
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 108-168 1.93e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 44.05  E-value: 1.93e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239396311 108 QKAVCRNCNGS------GAVICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGL 168
Cdd:PRK14283  145 HTKKCPVCNGSraepgsEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVekpCSNCHGKGV 214
DnaJ_zf cd10719
Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of ...
 112-167 2.63e-05

Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.


Pssm-ID: 199908 [Multi-domain]  Cd Length: 65  Bit Score: 40.70  E-value: 2.63e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1239396311 112 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 167
Cdd:cd10719     1 CPTCNGSGAkpgtkpKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIkdpCPKCKGKG 65
PRK14280 PRK14280
molecular chaperone DnaJ;
112-167 2.98e-05

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 43.56  E-value: 2.98e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239396311 112 CRNCNGSGA------VICDMCGGTGKWKA-----LNRKRAKDVyefteCPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14280  146 CDTCHGSGAkpgtskETCSHCGGSGQVSVeqntpFGRVVNRQT-----CPHCNGTGQEIkekCPTCHGKG 210
PRK14289 PRK14289
molecular chaperone DnaJ;
104-168 4.32e-05

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 43.28  E-value: 4.32e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1239396311 104 KAGVQKAV-CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTGL 168
Cdd:PRK14289  148 KFKVKKYVpCSHCHGTGAegnngsETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIkkkCKKCGGEGI 222
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 107-167 4.55e-05

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 43.21  E-value: 4.55e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1239396311 107 VQK-AVCRNCNGSGA------VICDMCGGTGKWKalnrkRAKDVYEF-TECPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14294  141 IQKlETCEECHGSGCepgtspTTCPQCGGSGQVT-----QSQGFFSIrTTCPRCRGMGKVIvspCKTCHGQG 207
DnaJ_CXXCXGXG pfam00684
DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four ...
 112-167 6.63e-05

DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found.


Pssm-ID: 459904 [Multi-domain]  Cd Length: 65  Bit Score: 39.46  E-value: 6.63e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1239396311 112 CRNCNGSGA------VICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 167
Cdd:pfam00684   1 CPTCNGSGAkpgtkpTTCPTCGGTGQVRRVQQTGPGFFQMQSTCPTCGGTGKIIkdpCKKCKGKG 65
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 108-167 1.36e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 41.65  E-value: 1.36e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239396311 108 QKAVCRNCNGSGAV------ICDMCGGTGKwkalnRKRAKDVYEF-TECPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14301  143 KNVTCDDCGGSGAApgtspeTCRHCGGSGQ-----VRQSQGFFQIaVPCPVCRGEGRVIthpCPKCKGSG 207
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 103-167 1.50e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 41.52  E-value: 1.50e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239396311 103 NKAGVQKAVCRNCNGSGAVicdMCGGtGKWKALnrkrakdvyefTECPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14285  157 SEKGTSPSICNMCNGSGRV---MQGG-GFFRVT-----------TTCPKCYGNGKIIsnpCKSCKGKG 209
PRK14293 PRK14293
molecular chaperone DnaJ;
73-130 2.11e-04

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 41.13  E-value: 2.11e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1239396311  73 SSRRRCLVCLGAVTLISATGPPNGLAAdamnkagvQKAVCRNCNGSGAVI---CDMCGGTG 130
Cdd:PRK14293  158 TGPTTCSTCGGAGQVRRATRTPFGSFT--------QVSECPTCNGTGQVIedpCDACGGQG 210
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 111-167 2.24e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 41.03  E-value: 2.24e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1239396311 111 VCRNCNGS-------GAVICDMCGGTGKWKALNRKRAKDVYEFTECPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14292  141 ECEHCHGSrtepggkPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIItdpCTVCRGRG 207
PRK14279 PRK14279
molecular chaperone DnaJ;
110-167 2.26e-04

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 40.87  E-value: 2.26e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239396311 110 AVCRNCNGSGA------VICDMCGGTGkwkALNRKRAkdVYEFTE-CPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14279  174 APCTTCHGSGArpgtspKVCPTCNGSG---VISRNQG--AFGFSEpCTDCRGTGSIIedpCEECKGTG 236
PRK14280 PRK14280
molecular chaperone DnaJ;
104-157 4.13e-04

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 40.09  E-value: 4.13e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239396311 104 KAGVQKAVCRNCNGSGAV---------------ICDMCGGTGKwkalnrkrakdvyEFTE-CPNCYGRGK 157
Cdd:PRK14280  155 KPGTSKETCSHCGGSGQVsveqntpfgrvvnrqTCPHCNGTGQ-------------EIKEkCPTCHGKGK 211
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 111-167 6.20e-04

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 39.78  E-value: 6.20e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1239396311 111 VCRNCNG------SGAVICDMCGGTGKWKALNRK-RAKDVYEFTeCPNCYGRGKL---VCPVCLGTG 167
Cdd:PRK14282  154 TCPHCGGtgvepgSGYVTCPKCHGTGRIREERRSfFGVFVSERT-CERCGGTGKIpgeYCHECGGSG 219
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 110-172 1.89e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 38.29  E-value: 1.89e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1239396311 110 AVCRNCNGSGAV------ICDMCGGTGKwkaLNRKRAKDVYEFTeCPNCYGRGKLV---CPVCLGTGLPNNK 172
Cdd:PRK14284  159 KSCDACSGSGANssqgikVCDRCKGSGQ---VVQSRGFFSMAST-CPECGGEGRVItdpCSVCRGQGRIKDK 226
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 111-168 2.03e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 38.21  E-value: 2.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1239396311 111 VCRNCNG------SGAVICDMCGGTGKwkalNRKRAKDVYEFTECPNCYGRGKL--VCPVCLGTGL 168
Cdd:PRK14291  158 PCEACGGtgydpgSGEKVCPTCGGSGE----IYQRGGFFRISQTCPTCGGEGVLrePCSKCNGRGL 219
PRK14295 PRK14295
molecular chaperone DnaJ;
104-167 2.36e-03

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 37.91  E-value: 2.36e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239396311 104 KAGVQKAVCRNCNGSGAVICDMCGgtgkwkalnrkrakdvYEFTE-CPNCYGRGKLV---CPVCLGTG 167
Cdd:PRK14295  178 KNGTTPRVCPTCSGTGQVSRNSGG----------------FSLSEpCPDCKGRGLIAddpCLVCKGSG 229
PRK14297 PRK14297
molecular chaperone DnaJ;
67-157 3.42e-03

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 37.46  E-value: 3.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239396311  67 EKETTPSSRRRCLVClgavtlisatgppNGLAAdamnKAGVQKAVCRNCNGSGAV---------------ICDMCGGTGK 131
Cdd:PRK14297  140 EKEISVTRNENCETC-------------NGTGA----KPGTSPKTCDKCGGTGQIrvqrntplgsfvsttTCDKCGGSGK 202

                          90       100
                  ....*....|....*....|....*.
gi 1239396311 132 wkalnrkrakdVYEfTECPNCYGRGK 157
Cdd:PRK14297  203 -----------VIE-DPCNKCHGKGK 216
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 111-157 5.31e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 36.85  E-value: 5.31e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1239396311 111 VCRNCNGSGAVI---------------CDMCGGTGKwkalnrkrakdvyEF-TECPNCYGRGK 157
Cdd:PRK14296  168 ICNNCHGTGEVLvqknmgffqfqqsakCNVCNGAGK-------------IIkNKCKNCKGKGK 217
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 121-167 5.33e-03

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 37.06  E-value: 5.33e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1239396311 121 VICDMCGGTGKwkalnrKRAKDVyefTECPNCYGRGKLV-----------CPVCLGTG 167
Cdd:PRK14291  157 VPCEACGGTGY------DPGSGE---KVCPTCGGSGEIYqrggffrisqtCPTCGGEG 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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