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Conserved domains on  [gi|182705207|sp|A6NDL7|]
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PUTATIVE PSEUDOGENE: RecName: Full=Putative methyltransferase-like protein 21E pseudogene

Protein Classification

class I SAM-dependent methyltransferase( domain architecture ID 106779)

class I SAM-dependent methyltransferase catalyzes the methylation of one or more specific substrates using S-adenosyl-L-methionine (SAM or AdoMet) as the methyl donor

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AdoMet_MTases super family cl17173
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
79-243 1.40e-34

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


The actual alignment was detected with superfamily member pfam10294:

Pssm-ID: 473071  Cd Length: 172  Bit Score: 122.83  E-value: 1.40e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207   79 GHEIRITEAM--DCyGAVVWPSALVLCYFLETNAKQ----YNMVDKNVIEIGAGTGLVSIVASLL--GAHVTATDLPELL 150
Cdd:pfam10294   4 NPGLRIEEDTgnGI-GGHVWDAAVVLSKYLEMKIFKelgaNNLSGLNVLELGSGTGLVGIAVALLlpGASVTITDLEEAL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207  151 GNLQYNISRNTkMKSKhlPQVKELSWGVALDTNFPrSSNNFDYILAADVVYAHPFLEELLITFDHLCKETTIILWAMKFR 230
Cdd:pfam10294  83 ELLKKNIELNA-LSSK--VVVKVLDWGENLPPDLF-DGHPVDLILAADCVYNEDSFPLLEKTLKDLLGKESVILVAYKKR 158
                         170
                  ....*....|...
gi 182705207  231 LEKENKFVDRFKE 243
Cdd:pfam10294 159 REAEKKFFKLLER 171
 
Name Accession Description Interval E-value
Methyltransf_16 pfam10294
Lysine methyltransferase; Methyltrans_16 is a lysine methyltransferase. characterized members ...
79-243 1.40e-34

Lysine methyltransferase; Methyltrans_16 is a lysine methyltransferase. characterized members of this family are protein methyltransferases targetting Lys residues in specific proteins, including calmodulin, VCP, Kin17 and Hsp70 proteins.


Pssm-ID: 313513  Cd Length: 172  Bit Score: 122.83  E-value: 1.40e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207   79 GHEIRITEAM--DCyGAVVWPSALVLCYFLETNAKQ----YNMVDKNVIEIGAGTGLVSIVASLL--GAHVTATDLPELL 150
Cdd:pfam10294   4 NPGLRIEEDTgnGI-GGHVWDAAVVLSKYLEMKIFKelgaNNLSGLNVLELGSGTGLVGIAVALLlpGASVTITDLEEAL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207  151 GNLQYNISRNTkMKSKhlPQVKELSWGVALDTNFPrSSNNFDYILAADVVYAHPFLEELLITFDHLCKETTIILWAMKFR 230
Cdd:pfam10294  83 ELLKKNIELNA-LSSK--VVVKVLDWGENLPPDLF-DGHPVDLILAADCVYNEDSFPLLEKTLKDLLGKESVILVAYKKR 158
                         170
                  ....*....|...
gi 182705207  231 LEKENKFVDRFKE 243
Cdd:pfam10294 159 REAEKKFFKLLER 171
prmA PRK00517
50S ribosomal protein L11 methyltransferase;
112-199 7.97e-07

50S ribosomal protein L11 methyltransferase;


Pssm-ID: 234786 [Multi-domain]  Cd Length: 250  Bit Score: 48.99  E-value: 7.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207 112 QYNMVDKNVIEIGAGTGLVSIVASLLGA-HVTATDLPEL-LGNLQYNISRNtkmkskhlpqvkelswGVALDTNFPRSSN 189
Cdd:PRK00517 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAkKVLAVDIDPQaVEAARENAELN----------------GVELNVYLPQGDL 178
                         90
                 ....*....|...
gi 182705207 190 NFDYILA---ADV 199
Cdd:PRK00517 179 KADVIVAnilANP 191
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
117-209 1.79e-05

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 43.08  E-value: 1.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207 117 DKNVIEIGAGTGLVSIVASLLGAHVTATDL-PELLGNLQynisrntkmksKHLPQVKeLSWGVALDTNFPRSSNNFDYIL 195
Cdd:COG2227   25 GGRVLDVGCGTGRLALALARRGADVTGVDIsPEALEIAR-----------ERAAELN-VDFVQGDLEDLPLEDGSFDLVI 92
                         90
                 ....*....|....*...
gi 182705207 196 AADVVY----AHPFLEEL 209
Cdd:COG2227   93 CSEVLEhlpdPAALLREL 110
hemK_rel_arch TIGR00537
HemK-related putative methylase; The gene hemK from E. coli was found to contribute to heme ...
118-162 4.65e-04

HemK-related putative methylase; The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase. Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 129628 [Multi-domain]  Cd Length: 179  Bit Score: 40.22  E-value: 4.65e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 182705207  118 KNVIEIGAGTGLVSIVASLLGAHVTATDL-PELLGNLQYNISRNTK 162
Cdd:TIGR00537  21 DDVLEIGAGTGLVAIRLKGKGKCILTTDInPFAVKELRENAKLNNV 66
 
Name Accession Description Interval E-value
Methyltransf_16 pfam10294
Lysine methyltransferase; Methyltrans_16 is a lysine methyltransferase. characterized members ...
79-243 1.40e-34

Lysine methyltransferase; Methyltrans_16 is a lysine methyltransferase. characterized members of this family are protein methyltransferases targetting Lys residues in specific proteins, including calmodulin, VCP, Kin17 and Hsp70 proteins.


Pssm-ID: 313513  Cd Length: 172  Bit Score: 122.83  E-value: 1.40e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207   79 GHEIRITEAM--DCyGAVVWPSALVLCYFLETNAKQ----YNMVDKNVIEIGAGTGLVSIVASLL--GAHVTATDLPELL 150
Cdd:pfam10294   4 NPGLRIEEDTgnGI-GGHVWDAAVVLSKYLEMKIFKelgaNNLSGLNVLELGSGTGLVGIAVALLlpGASVTITDLEEAL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207  151 GNLQYNISRNTkMKSKhlPQVKELSWGVALDTNFPrSSNNFDYILAADVVYAHPFLEELLITFDHLCKETTIILWAMKFR 230
Cdd:pfam10294  83 ELLKKNIELNA-LSSK--VVVKVLDWGENLPPDLF-DGHPVDLILAADCVYNEDSFPLLEKTLKDLLGKESVILVAYKKR 158
                         170
                  ....*....|...
gi 182705207  231 LEKENKFVDRFKE 243
Cdd:pfam10294 159 REAEKKFFKLLER 171
prmA PRK00517
50S ribosomal protein L11 methyltransferase;
112-199 7.97e-07

50S ribosomal protein L11 methyltransferase;


Pssm-ID: 234786 [Multi-domain]  Cd Length: 250  Bit Score: 48.99  E-value: 7.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207 112 QYNMVDKNVIEIGAGTGLVSIVASLLGA-HVTATDLPEL-LGNLQYNISRNtkmkskhlpqvkelswGVALDTNFPRSSN 189
Cdd:PRK00517 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAkKVLAVDIDPQaVEAARENAELN----------------GVELNVYLPQGDL 178
                         90
                 ....*....|...
gi 182705207 190 NFDYILA---ADV 199
Cdd:PRK00517 179 KADVIVAnilANP 191
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
117-209 1.79e-05

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 43.08  E-value: 1.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207 117 DKNVIEIGAGTGLVSIVASLLGAHVTATDL-PELLGNLQynisrntkmksKHLPQVKeLSWGVALDTNFPRSSNNFDYIL 195
Cdd:COG2227   25 GGRVLDVGCGTGRLALALARRGADVTGVDIsPEALEIAR-----------ERAAELN-VDFVQGDLEDLPLEDGSFDLVI 92
                         90
                 ....*....|....*...
gi 182705207 196 AADVVY----AHPFLEEL 209
Cdd:COG2227   93 CSEVLEhlpdPAALLREL 110
PrmA pfam06325
Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal ...
101-160 6.09e-05

Ribosomal protein L11 methyltransferase (PrmA); This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.


Pssm-ID: 428888 [Multi-domain]  Cd Length: 294  Bit Score: 43.41  E-value: 6.09e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 182705207  101 VLC-YFLEtnakQYNMVDKNVIEIGAGTGLVSIVASLLGA-HVTATDLPEL-LGNLQYNISRN 160
Cdd:pfam06325 149 KLClEALE----RLVKPGESVLDVGCGSGILAIAALKLGAkKVVGVDIDPVaVRAAKENAELN 207
PRK14968 PRK14968
putative methyltransferase; Provisional
117-146 6.42e-05

putative methyltransferase; Provisional


Pssm-ID: 237872 [Multi-domain]  Cd Length: 188  Bit Score: 42.58  E-value: 6.42e-05
                         10        20        30
                 ....*....|....*....|....*....|
gi 182705207 117 DKNVIEIGAGTGLVSIVASLLGAHVTATDL 146
Cdd:PRK14968  24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDI 53
PrmA COG2264
Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis];
105-160 8.43e-05

Ribosomal protein L11 methylase PrmA [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441865 [Multi-domain]  Cd Length: 284  Bit Score: 43.24  E-value: 8.43e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 182705207 105 FLETNAKQynmvDKNVIEIGAGTGLVSIVASLLGA-HVTATDL-PELLGNLQYNISRN 160
Cdd:COG2264  141 ALEKLLKP----GKTVLDVGCGSGILAIAAAKLGAkRVLAVDIdPVAVEAARENAELN 194
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
120-199 1.78e-04

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 39.85  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207  120 VIEIGAGTGLVSI-VASLLGAHVTATDL-PELLGNLQYNISRNTkmkskhlPQVkELSWGVALDTNFPRSSnnFDYILAA 197
Cdd:pfam13649   1 VLDLGCGTGRLTLaLARRGGARVTGVDLsPEMLERARERAAEAG-------LNV-EFVQGDAEDLPFPDGS--FDLVVSS 70

                  ..
gi 182705207  198 DV 199
Cdd:pfam13649  71 GV 72
hemK_rel_arch TIGR00537
HemK-related putative methylase; The gene hemK from E. coli was found to contribute to heme ...
118-162 4.65e-04

HemK-related putative methylase; The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase. Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 129628 [Multi-domain]  Cd Length: 179  Bit Score: 40.22  E-value: 4.65e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 182705207  118 KNVIEIGAGTGLVSIVASLLGAHVTATDL-PELLGNLQYNISRNTK 162
Cdd:TIGR00537  21 DDVLEIGAGTGLVAIRLKGKGKCILTTDInPFAVKELRENAKLNNV 66
Methyltransf_12 pfam08242
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
121-218 8.80e-04

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 400515 [Multi-domain]  Cd Length: 98  Bit Score: 37.73  E-value: 8.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207  121 IEIGAGTG--LVSIVASLLGAHVTATDL-PELLGNLQynisrnTKMKSKHLPQVKELSWGVALDTNFPRSSnnFDYILAA 197
Cdd:pfam08242   1 LEIGCGTGtlLRALLEALPGLEYTGLDIsPAALEAAR------ERLAALGLLNAVRVELFQLDLGELDPGS--FDVVVAS 72
                          90       100
                  ....*....|....*....|.
gi 182705207  198 DVVYAHPFLEELLITFDHLCK 218
Cdd:pfam08242  73 NVLHHLADPRAVLRNIRRLLK 93
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
117-201 1.32e-03

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 38.05  E-value: 1.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207 117 DKNVIEIGAGTGLVSIVASLLGAHVTATDL-PELLGNLQynisRNTKMKSKHLPQVKelswGVALDTNFPRSSnnFDYIL 195
Cdd:COG2226   23 GARVLDLGCGTGRLALALAERGARVTGVDIsPEMLELAR----ERAAEAGLNVEFVV----GDAEDLPFPDGS--FDLVI 92

                 ....*.
gi 182705207 196 AADVVY 201
Cdd:COG2226   93 SSFVLH 98
Tam COG4106
Trans-aconitate methyltransferase [Energy production and conversion];
117-216 1.69e-03

Trans-aconitate methyltransferase [Energy production and conversion];


Pssm-ID: 443282 [Multi-domain]  Cd Length: 100  Bit Score: 37.11  E-value: 1.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207 117 DKNVIEIGAGTGLVS--IVASLLGAHVTATDL-PELLGNLQynisrntkmksKHLPQVkELSWGVALDTNFPRSsnnFDY 193
Cdd:COG4106    2 PRRVLDLGCGTGRLTalLAERFPGARVTGVDLsPEMLARAR-----------ARLPNV-RFVVADLRDLDPPEP---FDL 66
                         90       100
                 ....*....|....*....|...
gi 182705207 194 ILAADVVYahpFLEELLITFDHL 216
Cdd:COG4106   67 VVSNAALH---WLPDHAALLARL 86
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
117-209 3.65e-03

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 37.29  E-value: 3.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207 117 DKNVIEIGAGTGLVSIVASLLGAHVTATDlpellgnlqynISRNtkMkskhLPQVKELSWGVAL---D-TNFPRSSNNFD 192
Cdd:COG4976   47 FGRVLDLGCGTGLLGEALRPRGYRLTGVD-----------LSEE--M----LAKAREKGVYDRLlvaDlADLAEPDGRFD 109
                         90
                 ....*....|....*..
gi 182705207 193 YILAADVVyahPFLEEL 209
Cdd:COG4976  110 LIVAADVL---TYLGDL 123
Methyltransf_11 pfam08241
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
121-200 5.98e-03

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 462406 [Multi-domain]  Cd Length: 94  Bit Score: 35.33  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207  121 IEIGAGTGLVSIVASLLGAHVTATDL-PELLGNLQYNISRNtkmkskHLPQVKelswGVALDTNFPrsSNNFDYILAADV 199
Cdd:pfam08241   1 LDVGCGTGLLTELLARLGARVTGVDIsPEMLELAREKAPRE------GLTFVV----GDAEDLPFP--DNSFDLVLSSEV 68

                  .
gi 182705207  200 V 200
Cdd:pfam08241  69 L 69
COG2263 COG2263
Predicted RNA methylase [General function prediction only];
117-159 6.57e-03

Predicted RNA methylase [General function prediction only];


Pssm-ID: 441864 [Multi-domain]  Cd Length: 199  Bit Score: 36.81  E-value: 6.57e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 182705207 117 DKNVIEIGAGTGLVSIVASLLGA-HVTATDL-PELLGNLQYNISR 159
Cdd:COG2263   46 GKTVLDLGCGTGMLAIGAALLGAkKVVGVDIdPEALEIARENAER 90
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
119-216 6.89e-03

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 36.82  E-value: 6.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 182705207 119 NVIEIGAGTGLVSIV-ASLLGAHVTATDL-PELLGNLQyniSRNTKMKSKHLpQVKELSWGVALDTNFPRssnnFDYILA 196
Cdd:COG0500   29 RVLDLGCGTGRNLLAlAARFGGRVIGIDLsPEAIALAR---ARAAKAGLGNV-EFLVADLAELDPLPAES----FDLVVA 100
                         90       100
                 ....*....|....*....|
gi 182705207 197 ADVVYAHPfLEELLITFDHL 216
Cdd:COG0500  101 FGVLHHLP-PEEREALLREL 119
COG4076 COG4076
Predicted RNA methylase [General function prediction only];
120-160 8.34e-03

Predicted RNA methylase [General function prediction only];


Pssm-ID: 443253 [Multi-domain]  Cd Length: 230  Bit Score: 36.55  E-value: 8.34e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 182705207 120 VIEIGAGTGLVSIVASLLGA-HVTATDL-PELLGNLQYNISRN 160
Cdd:COG4076   39 VLDIGTGSGLLSMLAARAGAkKVYAVEVnPDIAAVARRIIAAN 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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