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Conserved domains on  [gi|604413|gb|AAA61662|]
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cytochrome b, partial (mitochondrion) [Heterophallus rachovii]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-134 4.56e-100

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 291.17  E-value: 4.56e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      1 MANLRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 604413     81 NMHANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-134 4.56e-100

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 291.17  E-value: 4.56e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      1 MANLRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 604413     81 NMHANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-134 2.18e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 169.09  E-value: 2.18e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413    10 LLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASF 89
Cdd:cd00284   2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 604413    90 FFICIYLHIGRGLYYGSY--LFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:cd00284  82 FFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-134 1.37e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 1.37e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      18 VVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASFFFICIYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 604413      98 IGRGLYYG--SYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-134 4.27e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 148.01  E-value: 4.27e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413    22 PVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASFFFICIYLHIGRG 101
Cdd:COG1290  31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 604413   102 LYYGSYlfKE----TWNTGVILLLLVMMTAFVGYVLP 134
Cdd:COG1290 111 FFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLP 145
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-134 4.56e-100

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 291.17  E-value: 4.56e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      1 MANLRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 604413     81 NMHANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00119
cytochrome b; Provisional
 3-134 1.11e-90

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 267.54  E-value: 1.11e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      3 NLRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNM 82
Cdd:MTH00119   4 NLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 604413     83 HANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00119  84 HANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00100
cytochrome b; Provisional
 1-134 5.42e-89

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 263.04  E-value: 5.42e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      1 MANLRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 604413     81 NMHANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00074
cytochrome b; Provisional
 1-134 2.88e-87

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 258.84  E-value: 2.88e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      1 MANLRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 604413     81 NMHANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00191
cytochrome b; Provisional
 4-134 1.96e-85

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 253.68  E-value: 1.96e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      4 LRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 604413     84 ANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131
CYTB MTH00156
cytochrome b; Provisional
 11-134 9.32e-82

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 243.92  E-value: 9.32e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413     11 LKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASFF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 604413     91 FICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00145
cytochrome b; Provisional
 4-134 1.46e-79

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 239.04  E-value: 1.46e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      4 LRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMH 83
Cdd:MTH00145   5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 604413     84 ANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00145  85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00034
cytochrome b; Validated
 4-134 2.41e-78

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 236.14  E-value: 2.41e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      4 LRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 604413     84 ANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00016
cytochrome b; Validated
 4-134 2.28e-74

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 225.71  E-value: 2.28e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      4 LRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 604413     84 ANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00224
cytochrome b; Provisional
 4-134 2.15e-62

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 195.14  E-value: 2.15e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      4 LRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 604413     84 ANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 4-134 1.21e-59

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 187.99  E-value: 1.21e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      4 LRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 604413     84 ANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00053
cytochrome b; Provisional
 4-134 1.35e-56

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 180.29  E-value: 1.35e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      4 LRKTHALLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 604413     84 ANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-134 2.18e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 169.09  E-value: 2.18e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413    10 LLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASF 89
Cdd:cd00284   2 KLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASM 81

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 604413    90 FFICIYLHIGRGLYYGSY--LFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:cd00284  82 FFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-134 1.37e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 1.37e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      18 VVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASFFFICIYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 604413      98 IGRGLYYG--SYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
CYTB MTH00033
cytochrome b; Provisional
 4-134 7.29e-47

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 155.10  E-value: 7.29e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413      4 LRKThALLKVVNEaVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMH 83
Cdd:MTH00033   3 LRKT-GLLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 604413     84 ANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLP 131
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-134 4.27e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 148.01  E-value: 4.27e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413    22 PVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASFFFICIYLHIGRG 101
Cdd:COG1290  31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 604413   102 LYYGSYlfKE----TWNTGVILLLLVMMTAFVGYVLP 134
Cdd:COG1290 111 FFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLP 145
CYTB MTH00086
cytochrome b; Provisional
 14-134 2.63e-42

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 142.77  E-value: 2.63e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413     14 VNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASFFFIC 93
Cdd:MTH00086   3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 604413     94 IYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00086  83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV 123
CYTB MTH00046
cytochrome b; Validated
 10-134 1.46e-26

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 101.21  E-value: 1.46e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413     10 LLKVVNEAVVDLPVPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASF 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 604413     90 FFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLP 134
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125
PRK03735 PRK03735
cytochrome b6; Provisional
 33-134 7.46e-23

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 89.00  E-value: 7.46e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413     33 FGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASFFFICIYLHIGRGLYYGSYLFKE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....
gi 604413    112 -TWNTGVILLLLVMMTAFVGYVLP 134
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLP 147
petB CHL00070
cytochrome b6
 23-134 1.99e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 74.76  E-value: 1.99e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 604413     23 VPINISAWWNFGSLLGLCLLTQILTGLFLAMHYTSDITTAFSSVTHICRDVNFGWLIRNMHANGASFFFICIYLHIGRGL 102
Cdd:CHL00070  26 VPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVY 105

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 604413    103 YYGSylFKE----TWNTGVILLLLVMMTAFVGYVLP 134
Cdd:CHL00070 106 LTGG--FKKprelTWVTGVVLAVLTVSFGVTGYSLP 139
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-134 1.45e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 55.71  E-value: 1.45e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 604413      88 SFFFICIYLHIGRGLYYGSYLFKE--TWNTGVILLLLVMMTAFVGYVLP 134
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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