NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1244596|gb|AAA93269|]
View 

cytochrome b, partial (mitochondrion) [Passerella iliaca]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-144 5.52e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 289.11  E-value: 5.52e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLT 177
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-144 5.52e-99

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 289.11  E-value: 5.52e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLT 177
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-144 2.68e-59

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 182.18  E-value: 2.68e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596    1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSY--LYK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244596   79 ETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLT 170
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-144 5.32e-55

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 176.90  E-value: 5.32e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596    1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSylYKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKp 119

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244596   80 ---TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-144 1.59e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.48  E-value: 1.59e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596      1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244596     79 ETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLT 161
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-144 5.52e-99

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 289.11  E-value: 5.52e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLT 177
CYTB MTH00074
cytochrome b; Provisional
 1-144 1.92e-91

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 269.63  E-value: 1.92e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLT 177
CYTB MTH00100
cytochrome b; Provisional
 1-144 3.73e-91

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 269.20  E-value: 3.73e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLT 176
CYTB MTH00131
cytochrome b; Provisional
 1-144 4.43e-91

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 268.83  E-value: 4.43e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLT 176
CYTB MTH00156
cytochrome b; Provisional
 1-144 5.31e-89

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 262.80  E-value: 5.31e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLT 166
CYTB MTH00191
cytochrome b; Provisional
 1-144 3.60e-86

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 256.00  E-value: 3.60e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLT 173
CYTB MTH00145
cytochrome b; Provisional
 1-144 2.90e-82

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 246.36  E-value: 2.90e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLK 177
CYTB MTH00034
cytochrome b; Validated
 1-144 4.08e-80

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 240.76  E-value: 4.08e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLT 176
CYTB MTH00016
cytochrome b; Validated
 1-144 5.30e-79

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 238.04  E-value: 5.30e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLT 177
CYTB MTH00022
cytochrome b; Validated
 1-144 2.30e-66

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 205.71  E-value: 2.30e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLN 175
CYTB MTH00224
cytochrome b; Provisional
 1-138 5.94e-66

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 204.77  E-value: 5.94e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V 138
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAV 171
CYTB MTH00053
cytochrome b; Provisional
 1-138 3.79e-63

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 197.62  E-value: 3.79e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V 138
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSV 171
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-144 2.68e-59

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 182.18  E-value: 2.68e-59
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596    1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSY--LYK 78
Cdd:cd00284  25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244596   79 ETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:cd00284 105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLT 170
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-144 5.32e-55

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 176.90  E-value: 5.32e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596    1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSylYKE- 79
Cdd:COG1290  42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKp 119

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244596   80 ---TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:COG1290 120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-144 1.59e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.48  E-value: 1.59e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596      1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244596     79 ETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLT 161
CYTB MTH00033
cytochrome b; Provisional
 1-138 3.52e-51

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 167.04  E-value: 3.52e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V 138
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSV 167
CYTB MTH00086
cytochrome b; Provisional
 1-138 9.92e-49

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 159.72  E-value: 9.92e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKET 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1244596    81 WNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V 138
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGV 159
CYTB MTH00046
cytochrome b; Validated
 4-138 4.98e-35

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 123.94  E-value: 4.98e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     4 LLGICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKETWNI 83
Cdd:MTH00046  27 VLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNV 106

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1244596    84 GVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V 138
Cdd:MTH00046 107 GFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161
PRK03735 PRK03735
cytochrome b6; Provisional
 7-144 1.09e-23

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 91.70  E-value: 1.09e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     7 ICLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKE--TWNIG 84
Cdd:PRK03735  50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596    85 VILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:PRK03735 130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLT 189
petB CHL00070
cytochrome b6
 1-144 7.42e-21

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 84.00  E-value: 7.42e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     1 F*SLLGI---CLITQIITGLLLAMHYTADTSLAFSSV*HV*RDVQFGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLY 77
Cdd:CHL00070  33 FYCLGGItltCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 112

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1244596    78 KE--TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA**GF*V**P*LT 144
Cdd:CHL00070 113 PRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLT 181
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-138 1.26e-19

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 79.59  E-value: 1.26e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244596     56 SFFFICVYLHIGRGLYYGSYLYKE--TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIG*TLVEWA* 133
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80


                  ....*
gi 1244596    134 *GF*V 138
Cdd:pfam13631  81 GGPFP 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH