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Conserved domains on  [gi|33991236|gb|AAH04566|]
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Mitochondrial ribosomal protein S21 [Homo sapiens]

Protein Classification

bS21 family ribosomal protein( domain architecture ID 10015418)

bS21 family ribosomal protein such as prokaryotic 30S ribosomal protein S21 which is part of the small ribosomal subunit (30S), and eukaryotic mitochondrial 28S ribosomal protein S21 which is part of the mitochondrial ribosomal small subunit (28S)

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
S21p TIGR00030
ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most ...
 10-66 3.87e-13

ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


:

Pssm-ID: 129141  Cd Length: 58  Bit Score: 58.05  E-value: 3.87e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 33991236   10 RTVMVQEGN-VESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNM 66
Cdd:TIGR00030  1 PTVKVKEGEsIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
 
Name Accession Description Interval E-value
S21p TIGR00030
ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most ...
 10-66 3.87e-13

ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129141  Cd Length: 58  Bit Score: 58.05  E-value: 3.87e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 33991236   10 RTVMVQEGN-VESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNM 66
Cdd:TIGR00030  1 PTVKVKEGEsIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
Ribosomal_S21 pfam01165
Ribosomal protein S21;
11-60 1.79e-08

Ribosomal protein S21;


Pssm-ID: 460092  Cd Length: 51  Bit Score: 45.92  E-value: 1.79e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 33991236   11 TVMVQEG-NVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERC 60
Cdd:pfam01165  1 TVDVKEGeNIERALRRLKRKVERNGILRELRRRRFYEKPSEKRKRKKREAW 51
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 18-63 2.56e-04

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440590  Cd Length: 62  Bit Score: 35.47  E-value: 2.56e-04
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*.
gi 33991236 18 NVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRI 63
Cdd:COG0828 11 SIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQ 56
 
Name Accession Description Interval E-value
S21p TIGR00030
ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most ...
 10-66 3.87e-13

ribosomal protein S21; This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129141  Cd Length: 58  Bit Score: 58.05  E-value: 3.87e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 33991236   10 RTVMVQEGN-VESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNM 66
Cdd:TIGR00030  1 PTVKVKEGEsIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
Ribosomal_S21 pfam01165
Ribosomal protein S21;
11-60 1.79e-08

Ribosomal protein S21;


Pssm-ID: 460092  Cd Length: 51  Bit Score: 45.92  E-value: 1.79e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 33991236   11 TVMVQEG-NVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERC 60
Cdd:pfam01165  1 TVDVKEGeNIERALRRLKRKVERNGILRELRRRRFYEKPSEKRKRKKREAW 51
RpsU COG0828
Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 ...
 18-63 2.56e-04

Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S21 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440590  Cd Length: 62  Bit Score: 35.47  E-value: 2.56e-04
                       10        20        30        40
               ....*....|....*....|....*....|....*....|....*.
gi 33991236 18 NVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRI 63
Cdd:COG0828 11 SIDSALRRFKRKVEKEGILRELRRREHYEKPSEKRKRKKAAARRRQ 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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