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Conserved domains on  [gi|30185837|gb|AAH51503|]
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Phkb protein, partial [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Bac_rhamnosid6H super family cl46875
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain; This family consists of bacterial ...
 176-303 2.55e-09

Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain; This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.


The actual alignment was detected with superfamily member pfam00723:

Pssm-ID: 481215  Cd Length: 417  Bit Score: 57.84  E-value: 2.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30185837   176 EGPNFITMEGTVSDHIERVYRRAGsKKLWSVVRRAASLLNKVVDSlapsitnvlvqgkqvTLGAFGHEEEVISNPLSPRV 255
Cdd:pfam00723 306 GNPWYLCTFWAAEQLYDELYHWAG-RGRWTLTRYARGFFEKLVSS---------------TVGTPYSSSSFISIPLAVKE 369

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 30185837   256 IKNIIYYKCNTHDEREAVIQQELVIHIGWIISNSPELFSGMLKIRIGF 303
Cdd:pfam00723 370 YADGFVKAVEEYANSLGLLSEEVDVYTGEQLGAFPLTFSHAALLRAAL 417
 
Name Accession Description Interval E-value
Glyco_hydro_15 pfam00723
Glycosyl hydrolases family 15; In higher organizms this family is represented by phosphorylase ...
 176-303 2.55e-09

Glycosyl hydrolases family 15; In higher organizms this family is represented by phosphorylase kinase subunits.


Pssm-ID: 395586  Cd Length: 417  Bit Score: 57.84  E-value: 2.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30185837   176 EGPNFITMEGTVSDHIERVYRRAGsKKLWSVVRRAASLLNKVVDSlapsitnvlvqgkqvTLGAFGHEEEVISNPLSPRV 255
Cdd:pfam00723 306 GNPWYLCTFWAAEQLYDELYHWAG-RGRWTLTRYARGFFEKLVSS---------------TVGTPYSSSSFISIPLAVKE 369

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 30185837   256 IKNIIYYKCNTHDEREAVIQQELVIHIGWIISNSPELFSGMLKIRIGF 303
Cdd:pfam00723 370 YADGFVKAVEEYANSLGLLSEEVDVYTGEQLGAFPLTFSHAALLRAAL 417
 
Name Accession Description Interval E-value
Glyco_hydro_15 pfam00723
Glycosyl hydrolases family 15; In higher organizms this family is represented by phosphorylase ...
 176-303 2.55e-09

Glycosyl hydrolases family 15; In higher organizms this family is represented by phosphorylase kinase subunits.


Pssm-ID: 395586  Cd Length: 417  Bit Score: 57.84  E-value: 2.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30185837   176 EGPNFITMEGTVSDHIERVYRRAGsKKLWSVVRRAASLLNKVVDSlapsitnvlvqgkqvTLGAFGHEEEVISNPLSPRV 255
Cdd:pfam00723 306 GNPWYLCTFWAAEQLYDELYHWAG-RGRWTLTRYARGFFEKLVSS---------------TVGTPYSSSSFISIPLAVKE 369

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 30185837   256 IKNIIYYKCNTHDEREAVIQQELVIHIGWIISNSPELFSGMLKIRIGF 303
Cdd:pfam00723 370 YADGFVKAVEEYANSLGLLSEEVDVYTGEQLGAFPLTFSHAALLRAAL 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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