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Conserved domains on  [gi|144719310|gb|AAI16215|]
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RIKEN cDNA 2410091C18 gene [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Methyltransf_28 super family cl46525
Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative ...
 9-65 2.31e-06

Putative S-adenosyl-L-methionine-dependent methyltransferase; This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. In eukaryotes it plays a role in mitochondrial complex I activity.


The actual alignment was detected with superfamily member COG1565:

Pssm-ID: 480865  Cd Length: 376  Bit Score: 44.03  E-value: 2.31e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 144719310   9 LGPVEQRTFLKNMGIDVRLKVLldRAGEPSAKQQLLGGYDMLMNPQKMGERFHFFAL 65
Cdd:COG1565  309 LGYTTQGLFLLALGLLERLAAL--SAGDPAAALALRAAVKRLTLPAEMGELFKVLAL 363
 
Name Accession Description Interval E-value
MidA COG1565
SAM-dependent methyltransferase, MidA family [General function prediction only];
9-65 2.31e-06

SAM-dependent methyltransferase, MidA family [General function prediction only];


Pssm-ID: 441173  Cd Length: 376  Bit Score: 44.03  E-value: 2.31e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 144719310   9 LGPVEQRTFLKNMGIDVRLKVLldRAGEPSAKQQLLGGYDMLMNPQKMGERFHFFAL 65
Cdd:COG1565  309 LGYTTQGLFLLALGLLERLAAL--SAGDPAAALALRAAVKRLTLPAEMGELFKVLAL 363
 
Name Accession Description Interval E-value
MidA COG1565
SAM-dependent methyltransferase, MidA family [General function prediction only];
9-65 2.31e-06

SAM-dependent methyltransferase, MidA family [General function prediction only];


Pssm-ID: 441173  Cd Length: 376  Bit Score: 44.03  E-value: 2.31e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 144719310   9 LGPVEQRTFLKNMGIDVRLKVLldRAGEPSAKQQLLGGYDMLMNPQKMGERFHFFAL 65
Cdd:COG1565  309 LGYTTQGLFLLALGLLERLAAL--SAGDPAAALALRAAVKRLTLPAEMGELFKVLAL 363
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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