NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|19908522|gb|AAM02939|]
View 

cytochrome b, partial (mitochondrion) [Poecile lugubris lugens]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-351 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 719.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00119  29 SAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00119 109 LYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00119 189 LIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00119 269 IKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPF 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTIILVLFPLVAALENKILK 351
Cdd:MTH00119 349 IIIGQLASILYFTILLILFPLLGALENKMLN 379
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-351 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 719.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00119  29 SAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00119 109 LYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00119 189 LIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00119 269 IKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPF 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTIILVLFPLVAALENKILK 351
Cdd:MTH00119 349 IIIGQLASILYFTILLILFPLLGALENKMLN 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-346 4.72e-132

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 382.22  E-value: 4.72e-132
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   3 WWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-- 80
Cdd:COG1290  39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  81 ---LNketWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-F 156
Cdd:COG1290 119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvL 195

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522 157 LLPFIIAGLTLVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNllGDPENFTPA 232
Cdd:COG1290 196 LLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPA 273

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522 233 NPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTW 310
Cdd:COG1290 274 NPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTI 353

                       330       340       350
                ....*....|....*....|....*....|....*.
gi 19908522 311 VGSQPVehPFIII*QLASLSYFTIILVLFPLVAALE 346
Cdd:COG1290 354 LGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-179 1.72e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 261.92  E-value: 1.72e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:cd00284  20 SYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSY 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  81 LN--KETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLL 158
Cdd:cd00284 100 KKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLL 179

                       170       180
                ....*....|....*....|.
gi 19908522 159 PFIIAGLTLVHLTFLHETGSN 179
Cdd:cd00284 180 PFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-177 3.86e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.66  E-value: 3.86e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522     1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG-- 78
Cdd:pfam00033  11 SIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgf 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    79 SYLNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLL 158
Cdd:pfam00033  91 SYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLL 170

                         170
                  ....*....|....*....
gi 19908522   159 PFIIAGLTLVHLTFLHETG 177
Cdd:pfam00033 171 PFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 209-312 1.18e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.18e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   209 LILLVSLALFSPNLLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSM 288
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 19908522   289 TF-RPLSQILFwalVANLLVLTWVG 312
Cdd:TIGR01156 123 PFrRPVATTVF---LFGTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-351 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 719.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00119  29 SAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00119 109 LYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00119 189 LIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00119 269 IKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPF 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTIILVLFPLVAALENKILK 351
Cdd:MTH00119 349 IIIGQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00100
cytochrome b; Provisional
 1-351 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 664.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00100  28 SSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSY 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00100 108 LFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPF 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00100 188 IITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPH 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00100 268 IKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPF 347

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTIILVLFPLVAALENKILK 351
Cdd:MTH00100 348 IIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00131
cytochrome b; Provisional
 1-351 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 659.81  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00131  28 SVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSY 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00131 108 LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPF 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00131 188 VIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPH 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00131 268 IKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPF 347

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTIILVLFPLVAALENKILK 351
Cdd:MTH00131 348 IIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00074
cytochrome b; Provisional
 1-351 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 635.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00074  29 SSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00074 109 MYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00074 189 LIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00074 269 IQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPF 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTIILVLFPLVAALENKILK 351
Cdd:MTH00074 349 IEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 612.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00191  25 SYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00191 105 LNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00191 185 LIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVH 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00191 265 IKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPF 344

                        330       340
                 ....*....|....*....|.
gi 19908522  321 III*QLASLSYFTIILVLFPL 341
Cdd:MTH00191 345 ILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-339 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 596.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00156  18 SYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSY 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00156  98 KLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPF 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00156 178 IILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVH 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00156 258 IQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPY 337

                        330
                 ....*....|....*....
gi 19908522  321 III*QLASLSYFTIILVLF 339
Cdd:MTH00156 338 ILTGQILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-350 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 589.37  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00034  28 SIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSY 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00034 108 VNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPF 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00034 188 IIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPH 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00034 268 IQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPF 347

                        330       340       350
                 ....*....|....*....|....*....|
gi 19908522  321 III*QLASLSYFTIILVLFPLVAALENKIL 350
Cdd:MTH00034 348 ILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-350 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 588.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00145  29 SIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00145 109 LMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00145 189 VILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00145 269 IQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPY 348

                        330       340       350
                 ....*....|....*....|....*....|
gi 19908522  321 III*QLASLSYFTIILVLfPLVAALENKIL 350
Cdd:MTH00145 349 ETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-351 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 555.06  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00016  29 SIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00016 109 FLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00016 189 VIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00016 269 IKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPY 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTiILVLFPLVAALENKILK 351
Cdd:MTH00016 349 EFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-351 2.96e-177

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 496.54  E-value: 2.96e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00053  29 SYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSY 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00053 109 TKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00053 189 ILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00053 269 IKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPY 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTIILVLFPLVAALENKILK 351
Cdd:MTH00053 349 ILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-351 3.46e-176

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 493.83  E-value: 3.46e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00022  27 SYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGY 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00022 107 LKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPF 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00022 187 ILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVH 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00022 267 IQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPF 346

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTIILVLFPLVAALENKILK 351
Cdd:MTH00022 347 ILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-351 1.16e-165

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 467.09  E-value: 1.16e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00224  29 SIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSF 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00224 109 NLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPF 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00224 189 AIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIH 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00224 269 IKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPF 348

                        330       340       350
                 ....*....|....*....|....*....|.
gi 19908522  321 III*QLASLSYFTiILVLFPLVAALENKILK 351
Cdd:MTH00224 349 EGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-347 1.61e-133

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 385.83  E-value: 1.61e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00033  25 SYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00033 105 SRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPF 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFS--PNLLGDPENFTPANPLSTP 238
Cdd:MTH00033 185 VLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTP 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  239 PHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPV-E 317
Cdd:MTH00033 265 VHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgA 344

                        330       340       350
                 ....*....|....*....|....*....|
gi 19908522  318 HPFIII*QLASLSYFTIILVLFPLVAALEN 347
Cdd:MTH00033 345 DPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-346 4.72e-132

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 382.22  E-value: 4.72e-132
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   3 WWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-- 80
Cdd:COG1290  39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  81 ---LNketWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-F 156
Cdd:COG1290 119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvL 195

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522 157 LLPFIIAGLTLVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNllGDPENFTPA 232
Cdd:COG1290 196 LLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPA 273

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522 233 NPLSTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTW 310
Cdd:COG1290 274 NPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTI 353

                       330       340       350
                ....*....|....*....|....*....|....*.
gi 19908522 311 VGSQPVehPFIII*QLASLSYFTIILVLFPLVAALE 346
Cdd:COG1290 354 LGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-339 2.27e-118

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 346.16  E-value: 2.27e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00086  17 SYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSY 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00086  97 RLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPW 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVsLALFSPNLLGDPENFTPANPLSTPPH 240
Cdd:MTH00086 177 GLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFII-FSLFYPFNLGDPEMFIEADPMMSPVH 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  241 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSkqrSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPF 320
Cdd:MTH00086 256 IVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPF 332

                        330
                 ....*....|....*....
gi 19908522  321 III*QLASLSYFTIILVLF 339
Cdd:MTH00086 333 LFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-339 4.60e-90

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 274.17  E-value: 4.60e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:MTH00046  19 NYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSY 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   81 LNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPF 160
Cdd:MTH00046  99 SKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGF 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  161 IIAGLTLVHLTFLHETGSNNPLGIPSD-CDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPP 239
Cdd:MTH00046 179 VILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPV 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  240 HIKPEWYFLFAYAILRSIPNKLGGvLALAASVLVLFLMPllhtSKQRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHP 319
Cdd:MTH00046 259 SIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYP 333

                        330       340
                 ....*....|....*....|
gi 19908522  320 FIII*QLASLSyftIILVLF 339
Cdd:MTH00046 334 YLLISQLFSVL---MVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-179 1.72e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 261.92  E-value: 1.72e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY 80
Cdd:cd00284  20 SYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSY 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  81 LN--KETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLL 158
Cdd:cd00284 100 KKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLL 179

                       170       180
                ....*....|....*....|.
gi 19908522 159 PFIIAGLTLVHLTFLHETGSN 179
Cdd:cd00284 180 PFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-177 3.86e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.66  E-value: 3.86e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522     1 SAWWNFGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG-- 78
Cdd:pfam00033  11 SIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgf 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    79 SYLNKETWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLL 158
Cdd:pfam00033  91 SYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLL 170

                         170
                  ....*....|....*....
gi 19908522   159 PFIIAGLTLVHLTFLHETG 177
Cdd:pfam00033 171 PFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 180-327 5.23e-58

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 184.77  E-value: 5.23e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522 180 NPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLALFSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAILRSIPN 259
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19908522 260 KLGGVLALAASVLVLFLMPLLHTSKQRSmTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIII*QLA 327
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
231-331 2.67e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.03  E-value: 2.67e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   231 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLVLTW 310
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 19908522   311 VGSQPVEHPFIII*QLASLSY 331
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
61-226 1.16e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 153.55  E-value: 1.16e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    61 SFFFICIYFHIGRGIYYGSYLNKE--TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 138
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   139 GGFSVDNPTLTRFFALHF-LLPFIIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFVLMLILLVSLAL 217
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 19908522   218 FSPNLLGDP 226
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 6-182 4.30e-35

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 127.91  E-value: 4.30e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    6 FGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE- 84
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   85 -TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFII 162
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 19908522  163 AGLTLVHLTFLHETGSNNPL 182
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 6-182 9.17e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 115.97  E-value: 9.17e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522    6 FGSLLGICLVTQIVTGLLLAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE- 84
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   85 -TWNIGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFII 162
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195

                        170       180
                 ....*....|....*....|
gi 19908522  163 AGLTLVHLTFLHETGSNNPL 182
Cdd:CHL00070 196 AVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 211-312 9.22e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 65.59  E-value: 9.22e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522 211 LLVSLALFSPNLLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTF 290
Cdd:COG5679  51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPF 125

                        90       100
                ....*....|....*....|...
gi 19908522 291 -RPLSQILFwalVANLLVLTWVG 312
Cdd:COG5679 126 rRPVATAVF---LFGTLVTLWLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 202-312 1.78e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.64  E-value: 1.78e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522  202 ILGfvlMLILLVSLALFSPNLLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLL- 280
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                         90       100       110
                 ....*....|....*....|....*....|..
gi 19908522  281 HTSKQRSMTFRPLSQILFwalVANLLVLTWVG 312
Cdd:CHL00058 116 NVNKFQNPFRRPVATTVF---LIGTAVALWLG 144
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 209-312 1.18e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.18e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908522   209 LILLVSLALFSPNLLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKQRSM 288
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 19908522   289 TF-RPLSQILFwalVANLLVLTWVG 312
Cdd:TIGR01156 123 PFrRPVATTVF---LFGTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH