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Conserved domains on  [gi|19908524|gb|AAM02940|]
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cytochrome b, partial (mitochondrion) [Poecile superciliosus]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-342 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 646.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00119  39 GLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGV 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00119 119 ILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00119 199 LFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFA 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00119 279 YAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASIL 358

                        330       340
                 ....*....|....*....|..
gi 19908524  321 YFTIILILFPLVAALENKILKL 342
Cdd:MTH00119 359 YFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-342 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 646.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00119  39 GLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGV 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00119 119 ILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00119 199 LFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFA 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00119 279 YAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASIL 358

                        330       340
                 ....*....|....*....|..
gi 19908524  321 YFTIILILFPLVAALENKILKL 342
Cdd:MTH00119 359 YFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-336 1.82e-110

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 327.13  E-value: 1.82e-110
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   2 ICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----LNketW 76
Cdd:COG1290  48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---W 124

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  77 NVGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIIAGL 155
Cdd:COG1290 125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524 156 TLVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNllGDPEN*TPANPLSTPPH* 231
Cdd:COG1290 205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHI 282

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524 232 **************SIP--NKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVehP 309
Cdd:COG1290 283 QPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--I 360

                       330       340
                ....*....|....*....|....*..
gi 19908524 310 FIIIGQLASLSYFTIILILFPLVAALE 336
Cdd:COG1290 361 ATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-169 1.85e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 248.82  E-value: 1.85e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KETWNV 78
Cdd:cd00284  30 GTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVI 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  79 GVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLV 158
Cdd:cd00284 110 GVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVIL 189

                       170
                ....*....|.
gi 19908524 159 HLTFLHETGSN 169
Cdd:cd00284 190 HLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-167 2.18e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 219.95  E-value: 2.18e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524     1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKETWNV 78
Cdd:pfam00033  21 GLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVI 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    79 GVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLV 158
Cdd:pfam00033 101 GVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLL 180


                  ....*....
gi 19908524   159 HLTFLHETG 167
Cdd:pfam00033 181 HLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-342 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 646.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00119  39 GLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGV 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00119 119 ILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00119 199 LFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFA 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00119 279 YAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASIL 358

                        330       340
                 ....*....|....*....|..
gi 19908524  321 YFTIILILFPLVAALENKILKL 342
Cdd:MTH00119 359 YFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 594.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00131  38 GLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGV 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00131 118 VLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHL 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00131 198 LFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00131 278 YAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVL 357

                        330       340
                 ....*....|....*....|.
gi 19908524  321 YFTIILILFPLVAALENKILK 341
Cdd:MTH00131 358 YFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 592.38  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00100  38 GICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGI 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00100 118 ILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHL 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00100 198 LFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00100 278 YAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASIL 357

                        330       340
                 ....*....|....*....|.
gi 19908524  321 YFTIILILFPLVAALENKILK 341
Cdd:MTH00100 358 YFLIILILMPIASLIENNLLK 378
CYTB MTH00074
cytochrome b; Provisional
 1-342 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 569.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00074  39 GVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGV 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00074 119 ILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00074 199 LFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFA 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00074 279 YAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASIL 358

                        330       340
                 ....*....|....*....|..
gi 19908524  321 YFTIILILFPLVAALENKILKL 342
Cdd:MTH00074 359 YFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-331 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 542.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00191  35 GLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGV 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00191 115 ILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00191 195 LFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFA 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00191 275 YAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFL 354

                        330
                 ....*....|.
gi 19908524  321 YFTIILILFPL 331
Cdd:MTH00191 355 YFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 1-340 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 528.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00034  38 GLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGV 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00034 118 ILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHL 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00034 198 LFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00034 278 YAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVL 357

                        330       340
                 ....*....|....*....|
gi 19908524  321 YFTIILILFPLVAALENKIL 340
Cdd:MTH00034 358 YFSLFLFFFPLISYLENKLI 377
CYTB MTH00156
cytochrome b; Provisional
 1-329 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 522.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00156  28 GLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGV 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00156 108 IILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00156 188 LFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFA 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00156 268 YAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTIL 347


                 ....*....
gi 19908524  321 YFTIILILF 329
Cdd:MTH00156 348 YFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 519.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00145  39 GLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGV 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00145 119 TLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00145 199 LFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFA 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00145 279 YAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVL 358

                        330       340
                 ....*....|....*....|
gi 19908524  321 YFTIILILfPLVAALENKIL 340
Cdd:MTH00145 359 YFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-341 1.87e-175

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 491.50  E-value: 1.87e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00016  39 GLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGV 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00016 119 ILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00016 199 LFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWA 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00016 279 YAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVF 358

                        330       340
                 ....*....|....*....|.
gi 19908524  321 YFTIILIlFPLVAALENKILK 341
Cdd:MTH00016 359 YFFYFMI-NPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-342 4.33e-157

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 445.30  E-value: 4.33e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00053  39 GFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGV 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00053 119 LIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHL 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00053 199 IALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFA 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00053 279 YAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIF 358

                        330       340
                 ....*....|....*....|..
gi 19908524  321 YFTIILILFPLVAALENKILKL 342
Cdd:MTH00053 359 YFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-341 6.80e-156

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 441.83  E-value: 6.80e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00022  37 GLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGV 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00022 117 VIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHL 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00022 197 IYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFA 276

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00022 277 YAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFF 356

                        330       340
                 ....*....|....*....|.
gi 19908524  321 YFTIILILFPLVAALENKILK 341
Cdd:MTH00022 357 YFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-341 5.12e-145

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 414.32  E-value: 5.12e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00224  39 GLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGV 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00224 119 ILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHI 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00224 199 MFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWM 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00224 279 YAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTIL 358

                        330       340
                 ....*....|....*....|.
gi 19908524  321 YFTiILILFPLVAALENKILK 341
Cdd:MTH00224 359 YFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 2-337 2.05e-116

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 341.92  E-value: 2.05e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    2 ICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGVI 81
Cdd:MTH00033  36 LCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVL 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   82 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHLT 161
Cdd:MTH00033 116 IFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLL 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  162 FLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFS--PNLLGDPEN*TPANPLSTPPH********* 239
Cdd:MTH00033 196 TLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLF 275

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  240 ******SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPV-EHPFIIIGQLAS 318
Cdd:MTH00033 276 AYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIAT 355

                        330
                 ....*....|....*....
gi 19908524  319 LSYFTIILILFPLVAALEN 337
Cdd:MTH00033 356 IFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-336 1.82e-110

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 327.13  E-value: 1.82e-110
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   2 ICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSY-----LNketW 76
Cdd:COG1290  48 YSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---W 124

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  77 NVGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIIAGL 155
Cdd:COG1290 125 IIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLAL 204

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524 156 TLVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNllGDPEN*TPANPLSTPPH* 231
Cdd:COG1290 205 VVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHI 282

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524 232 **************SIP--NKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVehP 309
Cdd:COG1290 283 QPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--I 360

                       330       340
                ....*....|....*....|....*..
gi 19908524 310 FIIIGQLASLSYFTIILILFPLVAALE 336
Cdd:COG1290 361 ATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-329 6.99e-96

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 288.38  E-value: 6.99e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00086  27 GMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00086 107 TIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHL 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFaLMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********** 240
Cdd:MTH00086 187 IFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFA 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  241 *****SIPNKLGGVLALAASVLVLFLMPLLHTSkqrSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASLS 320
Cdd:MTH00086 266 YAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFI 342


                 ....*....
gi 19908524  321 YFTIILILF 329
Cdd:MTH00086 343 YFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-169 1.85e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 248.82  E-value: 1.85e-82
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLN--KETWNV 78
Cdd:cd00284  30 GTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVI 109

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  79 GVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLV 158
Cdd:cd00284 110 GVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVIL 189

                       170
                ....*....|.
gi 19908524 159 HLTFLHETGSN 169
Cdd:cd00284 190 HLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 1-329 1.49e-73

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 231.41  E-value: 1.49e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKETWNVGV 80
Cdd:MTH00046  29 SVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGF 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   81 ILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLVHL 160
Cdd:MTH00046 109 ILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHL 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  161 TFLHETGSNNPLGIPSD-CDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH********* 239
Cdd:MTH00046 189 FYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLA 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524  240 ******SIPNKLGGvLALAASVLVLFLMPllhtSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLASL 319
Cdd:MTH00046 269 FYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343

                        330
                 ....*....|
gi 19908524  320 SyftIILILF 329
Cdd:MTH00046 344 L---MVLLLF 350
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-167 2.18e-71

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 219.95  E-value: 2.18e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524     1 GICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYG--SYLNKETWNV 78
Cdd:pfam00033  21 GLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVI 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    79 GVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFIIAGLTLV 158
Cdd:pfam00033 101 GVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLL 180


                  ....*....
gi 19908524   159 HLTFLHETG 167
Cdd:pfam00033 181 HLLFLHETG 189
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
51-216 5.16e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 154.32  E-value: 5.16e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    51 SFFFICIYFHIGRGIYYGSYLNKE--TWNVGVILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAW 128
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   129 GGFSVDNPTLTRFFALHF-LLPFIIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLAL 207
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 19908524   208 FSPNLLGDP 216
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 170-317 3.75e-43

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 145.87  E-value: 3.75e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524 170 NPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPEN*TPANPLSTPPH***************SIPN 249
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19908524 250 KLGGVLALAASVLVLFLMPLLHTSKQRSmTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLA 317
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
PRK03735 PRK03735
cytochrome b6; Provisional
 2-172 3.42e-34

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 125.21  E-value: 3.42e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    2 ICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE--TWNVG 79
Cdd:PRK03735  50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   80 VILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIIAGLTLV 158
Cdd:PRK03735 130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLA 209

                        170
                 ....*....|....
gi 19908524  159 HLTFLHETGSNNPL 172
Cdd:PRK03735 210 HFLMIRKQGISGPL 223
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
221-321 1.52e-31

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 114.11  E-value: 1.52e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   221 PANPLSTPPH***************SIPNKLGGVLALAASVLVLFLMPLLHTSKQRSMTFRPLSQILFWALVANLLILTW 300
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 19908524   301 VGSQPVEHPFIIIGQLASLSY 321
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
petB CHL00070
cytochrome b6
 2-172 7.86e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 113.28  E-value: 7.86e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524    2 ICLATQIITGLLLAMHYTADTALAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYFHIGRGIYYGSYLNKE--TWNVG 79
Cdd:CHL00070  42 TCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTG 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908524   80 VILLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYVGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFIIAGLTLV 158
Cdd:CHL00070 122 VVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLM 201

                        170
                 ....*....|....
gi 19908524  159 HLTFLHETGSNNPL 172
Cdd:CHL00070 202 HFLMIRKQGISGPL 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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