|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-348 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 698.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:MTH00119 30 AWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 NKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFV 160
Cdd:MTH00119 110 YKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 161 IAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00119 190 IAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00119 270 KPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFI 349
|
330 340
....*....|....*....|....*...
gi 19908550 321 IIGQLASLSYFTIILVLFPITAALENKI 348
Cdd:MTH00119 350 IIGQLASILYFTILLILFPLLGALENKM 377
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
2-345 |
9.82e-129 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 373.74 E-value: 9.82e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 2 WWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSY-- 79
Cdd:COG1290 39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 80 ---LNketWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-F 155
Cdd:COG1290 119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvL 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 156 LLPFVIAGLTLVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNllGDPENFTPA 231
Cdd:COG1290 196 LLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPA 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 232 NP******IKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTW 309
Cdd:COG1290 274 NPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTI 353
|
330 340 350
....*....|....*....|....*....|....*.
gi 19908550 310 VGSQPVehPFIIIGQLASLSYFTIILVLFPITAALE 345
Cdd:COG1290 354 LGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-178 |
4.29e-87 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 260.76 E-value: 4.29e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:cd00284 21 YWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 N--KETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 158
Cdd:cd00284 101 KprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLP 180
|
170 180
....*....|....*....|
gi 19908550 159 FVIAGLTLVHLTFLHETGSN 178
Cdd:cd00284 181 FIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-176 |
4.17e-76 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 232.27 E-value: 4.17e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYG--S 78
Cdd:pfam00033 12 IWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 79 YLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 158
Cdd:pfam00033 92 YPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLP 171
|
170
....*....|....*...
gi 19908550 159 FVIAGLTLVHLTFLHETG 176
Cdd:pfam00033 172 FILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
208-311 |
2.19e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 55.57 E-value: 2.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 208 LILLVSLALFSPNLLGDPenftpANP******IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHT-SKHRS 286
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122
|
90 100
....*....|....*....|....*
gi 19908550 287 MTFRPLSQILFwalVANLLVLTWVG 311
Cdd:TIGR01156 123 PFRRPVATTVF---LFGTVVALWLG 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-348 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 698.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:MTH00119 30 AWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 NKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFV 160
Cdd:MTH00119 110 YKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 161 IAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00119 190 IAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00119 270 KPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFI 349
|
330 340
....*....|....*....|....*...
gi 19908550 321 IIGQLASLSYFTIILVLFPITAALENKI 348
Cdd:MTH00119 350 IIGQLASILYFTILLILFPLLGALENKM 377
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-348 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 641.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:MTH00100 29 SWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 NKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFV 160
Cdd:MTH00100 109 FLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFI 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 161 IAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00100 189 ITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHI 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00100 269 KPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFI 348
|
330 340
....*....|....*....|....*...
gi 19908550 321 IIGQLASLSYFTIILVLFPITAALENKI 348
Cdd:MTH00100 349 IIGQLASILYFLIILILMPIASLIENNL 376
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-348 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 639.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:MTH00131 29 VWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 NKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFV 160
Cdd:MTH00131 109 YKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFV 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 161 IAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00131 189 IAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHI 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00131 269 KPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFI 348
|
330 340
....*....|....*....|....*...
gi 19908550 321 IIGQLASLSYFTIILVLFPITAALENKI 348
Cdd:MTH00131 349 IIGQVASVLYFSLFLVLMPLAGWLENKA 376
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-348 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 612.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:MTH00074 30 SLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYM 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 NKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFV 160
Cdd:MTH00074 110 YKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 161 IAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00074 190 IAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00074 270 QPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFI 349
|
330 340
....*....|....*....|....*...
gi 19908550 321 IIGQLASLSYFTIILVLFPITAALENKI 348
Cdd:MTH00074 350 EIGQAASILYFLLFIIIIPLTGWLENKL 377
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-340 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 593.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:MTH00191 26 YWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 NKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFV 160
Cdd:MTH00191 106 NKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 161 IAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00191 186 IAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00191 266 KPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFI 345
|
330 340
....*....|....*....|
gi 19908550 321 IIGQLASLSYFTIILVLFPI 340
Cdd:MTH00191 346 LLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-338 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 580.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:MTH00156 19 YWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 NKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFV 160
Cdd:MTH00156 99 LKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFI 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 161 IAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00156 179 ILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHI 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00156 259 QPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYI 338
|
330
....*....|....*...
gi 19908550 321 IIGQLASLSYFTIILVLF 338
Cdd:MTH00156 339 LTGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
2-348 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 573.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 2 WWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLN 81
Cdd:MTH00145 31 WWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLM 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 82 KETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVI 161
Cdd:MTH00145 111 QHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 162 AGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******IK 241
Cdd:MTH00145 191 LGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQ 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 242 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFII 321
Cdd:MTH00145 271 PEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYET 350
|
330 340
....*....|....*....|....*..
gi 19908550 322 IGQLASLSYFTIILVLfPITAALENKI 348
Cdd:MTH00145 351 IGQVFTVLYFLFFLIL-PLVQKLWDNI 376
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-348 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 570.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:MTH00034 29 IWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYV 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 NKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFV 160
Cdd:MTH00034 109 NIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFI 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 161 IAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00034 189 IAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHI 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00034 269 QPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFI 348
|
330 340
....*....|....*....|....*...
gi 19908550 321 IIGQLASLSYFTIILVLFPITAALENKI 348
Cdd:MTH00034 349 LLGQVASVLYFSLFLFFFPLISYLENKL 376
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-348 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 536.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:MTH00016 30 IWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYF 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 NKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFV 160
Cdd:MTH00016 110 LMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFV 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 161 IAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00016 190 IAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHI 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00016 270 KPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYE 349
|
330 340
....*....|....*....|....*...
gi 19908550 321 IIGQLASLSYFTiILVLFPITAALENKI 348
Cdd:MTH00016 350 FLGQIFTVFYFF-YFMINPLLMKLWDKL 376
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
3-348 |
7.02e-172 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 482.66 E-value: 7.02e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 3 WNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNK 82
Cdd:MTH00022 30 WNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKF 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 83 ETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIA 162
Cdd:MTH00022 110 HVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 163 GLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******IKP 242
Cdd:MTH00022 190 FLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQP 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 243 EWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIII 322
Cdd:MTH00022 270 EWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILI 349
|
330 340
....*....|....*....|....*.
gi 19908550 323 GQLASLSYFTIILVLFPITAALENKI 348
Cdd:MTH00022 350 GQLLSFFYFFYFLVLIPLLGELENQL 375
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
3-348 |
2.14e-170 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 479.20 E-value: 2.14e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 3 WNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNK 82
Cdd:MTH00053 32 WNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 83 ETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVIA 162
Cdd:MTH00053 112 IVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 163 GLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******IKP 242
Cdd:MTH00053 192 GLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKP 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 243 EWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIII 322
Cdd:MTH00053 272 EWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILI 351
|
330 340
....*....|....*....|....*.
gi 19908550 323 GQLASLSYFTIILVLFPITAALENKI 348
Cdd:MTH00053 352 GQIASIFYFAYFLILMPLAGYLENKL 377
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
2-336 |
7.11e-161 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 454.76 E-value: 7.11e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 2 WWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLN 81
Cdd:MTH00224 31 WWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 82 KETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVI 161
Cdd:MTH00224 111 SETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAI 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 162 AGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******IK 241
Cdd:MTH00224 191 MGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIK 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 242 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFII 321
Cdd:MTH00224 271 PEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEG 350
|
330
....*....|....*
gi 19908550 322 IGQLASLSYFTIILV 336
Cdd:MTH00224 351 IGQVFTILYFSYFII 365
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
2-346 |
1.32e-130 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 378.13 E-value: 1.32e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 2 WWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLN 81
Cdd:MTH00033 27 WWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSR 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 82 KETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVI 161
Cdd:MTH00033 107 VLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 162 AGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFS--PNLLGDPENFTPANP****** 239
Cdd:MTH00033 187 VGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVH 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 240 IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPV-EHP 318
Cdd:MTH00033 267 IQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADP 346
|
330 340
....*....|....*....|....*...
gi 19908550 319 FIIIGQLASLSYFTIILVLFPITAALEN 346
Cdd:MTH00033 347 YVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
2-345 |
9.82e-129 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 373.74 E-value: 9.82e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 2 WWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSY-- 79
Cdd:COG1290 39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 80 ---LNketWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-F 155
Cdd:COG1290 119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvL 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 156 LLPFVIAGLTLVHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNllGDPENFTPA 231
Cdd:COG1290 196 LLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPA 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 232 NP******IKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTW 309
Cdd:COG1290 274 NPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTI 353
|
330 340 350
....*....|....*....|....*....|....*.
gi 19908550 310 VGSQPVehPFIIIGQLASLSYFTIILVLFPITAALE 345
Cdd:COG1290 354 LGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
2-338 |
5.28e-116 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 339.99 E-value: 5.28e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 2 WWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLN 81
Cdd:MTH00086 19 WWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 82 KETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVI 161
Cdd:MTH00086 99 KKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 162 AGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFaLMLILLVSLALFSPNLLGDPENFTPANP******IK 241
Cdd:MTH00086 179 LVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIV 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 242 PEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSkhrSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFII 321
Cdd:MTH00086 258 PEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLF 334
|
330
....*....|....*..
gi 19908550 322 IGQLASLSYFTIILVLF 338
Cdd:MTH00086 335 LSQIFSFIYFFLILLML 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-178 |
4.29e-87 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 260.76 E-value: 4.29e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYL 80
Cdd:cd00284 21 YWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 81 N--KETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 158
Cdd:cd00284 101 KprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLP 180
|
170 180
....*....|....*....|
gi 19908550 159 FVIAGLTLVHLTFLHETGSN 178
Cdd:cd00284 181 FIIAVIVILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-338 |
5.15e-86 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 263.38 E-value: 5.15e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 2 WWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLN 81
Cdd:MTH00046 21 YWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 82 KETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFVI 161
Cdd:MTH00046 101 KGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVI 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 162 AGLTLVHLTFLHETGSNNPLGIPSD-CDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******I 240
Cdd:MTH00046 181 LGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSI 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 241 KPEWYFLFAYAILRSIPNKLGGvLALAASVLVLFLMPllhtSKHRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFI 320
Cdd:MTH00046 261 KPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYL 335
|
330
....*....|....*...
gi 19908550 321 IIGQLASLSyftIILVLF 338
Cdd:MTH00046 336 LISQLFSVL---MVLLLF 350
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-176 |
4.17e-76 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 232.27 E-value: 4.17e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 1 AWWNFGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYG--S 78
Cdd:pfam00033 12 IWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 79 YLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLP 158
Cdd:pfam00033 92 YPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLP 171
|
170
....*....|....*...
gi 19908550 159 FVIAGLTLVHLTFLHETG 176
Cdd:pfam00033 172 FILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
179-326 |
1.10e-52 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 170.90 E-value: 1.10e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 179 NPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNLLGDPENFTPANP******IKPEWYFLFAYAILRSIPN 258
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19908550 259 KLGGVLALAASVLVLFLMPLLHTSKHRSmTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLA 326
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
60-225 |
2.53e-45 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 152.78 E-value: 2.53e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 60 SLFFICIYFHIGRGIYYGSYLNKE--TWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 137
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 138 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSTKDILGFALMLILLVSLAL 216
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 19908550 217 FSPNLLGDP 225
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
230-330 |
1.09e-42 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 143.39 E-value: 1.09e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 230 PANP******IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHTSKHRSMTFRPLSQILFWALVANLLVLTW 309
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 19908550 310 VGSQPVEHPFIIIGQLASLSY 330
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
5-181 |
2.92e-36 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 130.60 E-value: 2.92e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 5 FGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKE- 83
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 84 -TWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVI 161
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170 180
....*....|....*....|
gi 19908550 162 AGLTLVHLTFLHETGSNNPL 181
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
|
|
| petB |
CHL00070 |
cytochrome b6 |
5-181 |
2.74e-31 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 117.51 E-value: 2.74e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 5 FGSLLGICLMTQIITGLLLAMHYTADTALAFNSVTHICRNVQFGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKE- 83
Cdd:CHL00070 36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 84 -TWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFVI 161
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195
|
170 180
....*....|....*....|
gi 19908550 162 AGLTLVHLTFLHETGSNNPL 181
Cdd:CHL00070 196 AVFMLMHFLMIRKQGISGPL 215
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
201-311 |
3.71e-10 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 58.09 E-value: 3.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 201 ILGfalMLILLVSLALFSPNLLGDPenftpANP******IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLL- 279
Cdd:CHL00058 44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115
|
90 100 110
....*....|....*....|....*....|..
gi 19908550 280 HTSKHRSMTFRPLSQILFwalVANLLVLTWVG 311
Cdd:CHL00058 116 NVNKFQNPFRRPVATTVF---LIGTAVALWLG 144
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
210-311 |
1.28e-09 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 56.34 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 210 LLVSLALFSPNLLGDPenftpANP******IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHT-SKHRSMT 288
Cdd:COG5679 51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPF 125
|
90 100
....*....|....*....|...
gi 19908550 289 FRPLSQILFwalVANLLVLTWVG 311
Cdd:COG5679 126 RRPVATAVF---LFGTLVTLWLG 145
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
208-311 |
2.19e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 55.57 E-value: 2.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908550 208 LILLVSLALFSPNLLGDPenftpANP******IKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLMPLLHT-SKHRS 286
Cdd:TIGR01156 48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122
|
90 100
....*....|....*....|....*
gi 19908550 287 MTFRPLSQILFwalVANLLVLTWVG 311
Cdd:TIGR01156 123 PFRRPVATTVF---LFGTVVALWLG 144
|
|
| |
