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Conserved domains on  [gi|19908556|gb|AAM02956|]
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cytochrome b, partial (mitochondrion) [Remiz pendulinus]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-338 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 645.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00119  43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00119 123 LLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLH 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00119 203 ETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00119 283 RSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTI 362

                        330
                 ....*....|....*...
gi 19908556  321 ILVLFPLAALLENKLLKL 338
Cdd:MTH00119 363 LLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-338 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 645.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00119  43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00119 123 LLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLH 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00119 203 ETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00119 283 RSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTI 362

                        330
                 ....*....|....*...
gi 19908556  321 ILVLFPLAALLENKLLKL 338
Cdd:MTH00119 363 LLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-332 2.35e-116

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 341.77  E-value: 2.35e-116
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSY-----LNketWNIG 75
Cdd:COG1290  51 VIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIG 127

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  76 VILLLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLV 154
Cdd:COG1290 128 VLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVL 207

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556 155 HLTFLHETGSNNPLGI----PADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNmlGDPENFTPANPLSTPPHIKPE 230
Cdd:COG1290 208 HLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPD 285

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556 231 WYFLFAYAILRSIP--NKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVehPFII 308
Cdd:COG1290 286 WYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATL 363

                       330       340
                ....*....|....*....|....
gi 19908556 309 IGQLASLSYFTIILVLFPLAALLE 332
Cdd:COG1290 364 LGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-165 5.88e-73

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 224.17  E-value: 5.88e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLN--KETWNIGVIL 78
Cdd:cd00284  34 VIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVIL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  79 LLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTF 158
Cdd:cd00284 114 LLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLF 193


                ....*..
gi 19908556 159 LHETGSN 165
Cdd:cd00284 194 LHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-163 3.63e-63

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 198.76  E-value: 3.63e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556     1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYG--SYLNKETWNIGVIL 78
Cdd:pfam00033  25 AVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVIL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    79 LLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTF 158
Cdd:pfam00033 105 LVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLF 184


                  ....*
gi 19908556   159 LHETG 163
Cdd:pfam00033 185 LHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 195-298 2.61e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.97  E-value: 2.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   195 LILLVSMALFSPNMLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVL***PLLHT-SKLRS 273
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 19908556   274 MTFRPLSQILFwalVANLLVLTWVG 298
Cdd:TIGR01156 123 PFRRPVATTVF---LFGTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-338 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 645.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00119  43 ITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00119 123 LLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLH 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00119 203 ETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAIL 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00119 283 RSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTI 362

                        330
                 ....*....|....*...
gi 19908556  321 ILVLFPLAALLENKLLKL 338
Cdd:MTH00119 363 LLILFPLLGALENKMLNY 380
CYTB MTH00100
cytochrome b; Provisional
 1-337 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 602.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00100  42 ILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLF 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00100 122 TVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLH 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00100 202 ETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAIL 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00100 282 RSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLI 361

                        330
                 ....*....|....*..
gi 19908556  321 ILVLFPLAALLENKLLK 337
Cdd:MTH00100 362 ILILMPIASLIENNLLK 378
CYTB MTH00131
cytochrome b; Provisional
 1-337 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 600.49  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00131  42 ITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00131 122 LVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLH 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00131 202 ETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAIL 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00131 282 RSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSL 361

                        330
                 ....*....|....*..
gi 19908556  321 ILVLFPLAALLENKLLK 337
Cdd:MTH00131 362 FLVLMPLAGWLENKALE 378
CYTB MTH00074
cytochrome b; Provisional
 1-338 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 573.94  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00074  43 IAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLF 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00074 123 LVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLH 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00074 203 ETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAIL 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00074 283 RSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLL 362

                        330
                 ....*....|....*...
gi 19908556  321 ILVLFPLAALLENKLLKL 338
Cdd:MTH00074 363 FIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-327 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 549.52  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00191  39 IIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLI 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00191 119 LSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLH 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00191 199 ETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAIL 278

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00191 279 RSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFL 358


                 ....*..
gi 19908556  321 ILVLFPL 327
Cdd:MTH00191 359 FLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-325 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 532.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00156  32 MIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILF 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00156 112 LVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLH 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00156 192 QTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAIL 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00156 272 RSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLY 351


                 ....*
gi 19908556  321 ILVLF 325
Cdd:MTH00156 352 FIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-336 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 531.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00034  42 IIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00034 122 LTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLH 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00034 202 QTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAIL 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00034 282 RSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSL 361

                        330
                 ....*....|....*.
gi 19908556  321 ILVLFPLAALLENKLL 336
Cdd:MTH00034 362 FLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-336 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 529.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00145  43 GIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00145 123 LSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLH 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00145 203 ETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAIL 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00145 283 RSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLF 362

                        330
                 ....*....|....*.
gi 19908556  321 ILVLfPLAALLENKLL 336
Cdd:MTH00145 363 FLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-337 2.66e-178

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 498.43  E-value: 2.66e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00016  43 VIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00016 123 LTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLH 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00016 203 QTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAIL 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTi 320
Cdd:MTH00016 283 RSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF- 361

                        330
                 ....*....|....*..
gi 19908556  321 ILVLFPLAALLENKLLK 337
Cdd:MTH00016 362 YFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-338 7.93e-161

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 454.55  E-value: 7.93e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00053  43 IIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00053 123 LMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALH 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00053 203 EDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAIL 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00053 283 RSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAY 362

                        330
                 ....*....|....*...
gi 19908556  321 ILVLFPLAALLENKLLKL 338
Cdd:MTH00053 363 FLILMPLAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-337 7.21e-160

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 451.85  E-value: 7.21e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00022  41 VIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00022 121 LTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLH 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00022 201 VDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAIL 280

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00022 281 RSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFY 360

                        330
                 ....*....|....*..
gi 19908556  321 ILVLFPLAALLENKLLK 337
Cdd:MTH00022 361 FLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-337 5.13e-149

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 424.33  E-value: 5.13e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00224  43 VIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFI 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00224 123 LTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLH 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00224 203 QTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAIL 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTi 320
Cdd:MTH00224 283 RSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS- 361

                        330
                 ....*....|....*..
gi 19908556  321 ILVLFPLAALLENKLLK 337
Cdd:MTH00224 362 YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 3-333 7.96e-121

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 353.09  E-value: 7.96e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    3 QIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLLAL 82
Cdd:MTH00033  41 QILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIM 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   83 MA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLHET 162
Cdd:MTH00033 121 MLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEK 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  163 GSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFS--PNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00033 201 GSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAIL 280

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPV-EHPFIIIGQLASLSYFT 319
Cdd:MTH00033 281 RSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFG 360

                        330
                 ....*....|....
gi 19908556  320 IILVLFPLAALLEN 333
Cdd:MTH00033 361 YFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-332 2.35e-116

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 341.77  E-value: 2.35e-116
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSY-----LNketWNIG 75
Cdd:COG1290  51 VIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WIIG 127

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  76 VILLLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLV 154
Cdd:COG1290 128 VLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVL 207

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556 155 HLTFLHETGSNNPLGI----PADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNmlGDPENFTPANPLSTPPHIKPE 230
Cdd:COG1290 208 HLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPD 285

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556 231 WYFLFAYAILRSIP--NKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTWVGSQPVehPFII 308
Cdd:COG1290 286 WYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATL 363

                       330       340
                ....*....|....*....|....
gi 19908556 309 IGQLASLSYFTIILVLFPLAALLE 332
Cdd:COG1290 364 LGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-325 8.17e-103

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 306.10  E-value: 8.17e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00086  31 VFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00086 111 LVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLH 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPADCDKIPFHPYYSIKDILGFaLMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAIL 240
Cdd:MTH00086 191 STGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAIL 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  241 RSIPNKLGGVLALAASVLVL***PLLHTSklrSMTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSYFTI 320
Cdd:MTH00086 270 RAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFL 346


                 ....*
gi 19908556  321 ILVLF 325
Cdd:MTH00086 347 ILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-325 1.74e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.83  E-value: 1.74e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKETWNIGVILLL 80
Cdd:MTH00046  33 VIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYL 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   81 ALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFLH 160
Cdd:MTH00046 113 LVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLH 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  161 ETGSNNPLGIPAD-CDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 239
Cdd:MTH00046 193 KSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAM 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  240 LRSIPNKLGGvLALAASVLVL***PLLHTSKLRSMtfrpLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLASLSyft 319
Cdd:MTH00046 273 LRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL--- 344


                 ....*.
gi 19908556  320 IILVLF 325
Cdd:MTH00046 345 MVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-165 5.88e-73

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 224.17  E-value: 5.88e-73
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLN--KETWNIGVIL 78
Cdd:cd00284  34 VIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVIL 113

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  79 LLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTF 158
Cdd:cd00284 114 LLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLF 193


                ....*..
gi 19908556 159 LHETGSN 165
Cdd:cd00284 194 LHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-163 3.63e-63

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 198.76  E-value: 3.63e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556     1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYG--SYLNKETWNIGVIL 78
Cdd:pfam00033  25 AVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVIL 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    79 LLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTF 158
Cdd:pfam00033 105 LVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLF 184


                  ....*
gi 19908556   159 LHETG 163
Cdd:pfam00033 185 LHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 166-313 4.30e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 176.68  E-value: 4.30e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556 166 NPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMALFSPNMLGDPENFTPANPLSTPPHIKPEWYFLFAYAILRSIPN 245
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19908556 246 KLGGVLALAASVLVL***PLLHTSKLRSmTFRPLSQILFWALVANLLVLTWVGSQPVEHPFIIIGQLA 313
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
217-317 3.36e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 154.94  E-value: 3.36e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   217 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVL***PLLHTSKLRSMTFRPLSQILFWALVANLLVLTW 296
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 19908556   297 VGSQPVEHPFIIIGQLASLSY 317
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
47-212 9.12e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 135.45  E-value: 9.12e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    47 SFFF***YFHIGRGLYYGSYLNKE--TWNIGVILLLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMW 124
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   125 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTFLHETGSNNPLGIPADCDKIPFHPYYSIKDILGFALMLILLVSMAL 203
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 19908556   204 FSPNMLGDP 212
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-168 7.13e-31

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 116.35  E-value: 7.13e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKE--TWNIGVIL 78
Cdd:PRK03735  53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLI 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   79 LLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHLT 157
Cdd:PRK03735 133 FFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFL 212

                        170
                 ....*....|.
gi 19908556  158 FLHETGSNNPL 168
Cdd:PRK03735 213 MIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-168 7.87e-28

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 107.88  E-value: 7.87e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556    1 ITQIITGLLLAMHYTADTSLAFASVSHTCRNVQFGWLIRNLHANG*SFFF***YFHIGRGLYYGSYLNKE--TWNIGVIL 78
Cdd:CHL00070  45 LVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   79 LLALMA*AFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHLT 157
Cdd:CHL00070 125 AVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFL 204

                        170
                 ....*....|.
gi 19908556  158 FLHETGSNNPL 168
Cdd:CHL00070 205 MIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 188-298 9.48e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 65.41  E-value: 9.48e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556  188 ILGfalMLILLVSMALFSPNMLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVL***PLL- 266
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                         90       100       110
                 ....*....|....*....|....*....|..
gi 19908556  267 HTSKLRSMTFRPLSQILFwalVANLLVLTWVG 298
Cdd:CHL00058 116 NVNKFQNPFRRPVATTVF---LIGTAVALWLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 197-298 2.94e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.04  E-value: 2.94e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556 197 LLVSMALFSPNMLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVL***PLLHT-SKLRSMT 275
Cdd:COG5679  51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPF 125

                        90       100
                ....*....|....*....|...
gi 19908556 276 FRPLSQILFwalVANLLVLTWVG 298
Cdd:COG5679 126 RRPVATAVF---LFGTLVTLWLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 195-298 2.61e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.97  E-value: 2.61e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908556   195 LILLVSMALFSPNMLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVL***PLLHT-SKLRS 273
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 19908556   274 MTFRPLSQILFwalVANLLVLTWVG 298
Cdd:TIGR01156 123 PFRRPVATTVF---LFGTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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