NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|19908558|gb|AAM02957|]
View 

cytochrome b, partial (mitochondrion) [Auriparus flaviceps]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-336 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00119  42 LITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00119 122 LLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFL 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00119 202 HETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAI 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00119 282 LRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFT 361

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00119 362 ILLILFPLLGALENKM 377
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-336 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00119  42 LITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00119 122 LLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFL 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00119 202 HETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAI 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00119 282 LRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFT 361

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00119 362 ILLILFPLLGALENKM 377
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-333 1.17e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 360.26  E-value: 1.17e-123
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSY-----LNketWNV 75
Cdd:COG1290  50 FVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WII 126

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  76 GVLLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTL 154
Cdd:COG1290 127 GVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVV 206

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558 155 VHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNllGDPENFTPANPLSTPPHIKP 230
Cdd:COG1290 207 LHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQP 284

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558 231 EWYFLFAYAILRSIP--NKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVehPFI 308
Cdd:COG1290 285 DWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IAT 362

                       330       340
                ....*....|....*....|....*
gi 19908558 309 IIGQLASFTYFAIILVLLPLASILE 333
Cdd:COG1290 363 LLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-166 8.52e-75

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 228.79  E-value: 8.52e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLN--KETWNVGVL 78
Cdd:cd00284  33 LVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVI 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  79 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 158
Cdd:cd00284 113 LLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLL 192


                ....*...
gi 19908558 159 FLHETGSN 166
Cdd:cd00284 193 FLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-164 6.44e-66

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 206.08  E-value: 6.44e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558     1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYG--SYLNKETWNVGVL 78
Cdd:pfam00033  24 LAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVI 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    79 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 158
Cdd:pfam00033 104 LLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLL 183


                  ....*.
gi 19908558   159 FLHETG 164
Cdd:pfam00033 184 FLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 196-299 5.46e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.89  E-value: 5.46e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   196 LTVLVTLALYSPNLLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHT-SKLRS 274
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 19908558   275 MTFRPISQILFwaLVANFFVLtWVG 299
Cdd:TIGR01156 123 PFRRPVATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-336 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 668.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00119  42 LITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00119 122 LLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFL 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00119 202 HETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAI 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00119 282 LRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFT 361

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00119 362 ILLILFPLLGALENKM 377
CYTB MTH00100
cytochrome b; Provisional
 1-336 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 618.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00100  41 LILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00100 121 FTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFL 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00100 201 HETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAI 280

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00100 281 LRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00100 361 IILILMPIASLIENNL 376
CYTB MTH00131
cytochrome b; Provisional
 1-336 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 615.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00131  41 LITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00131 121 LLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFL 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00131 201 HETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAI 280

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00131 281 LRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFS 360

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00131 361 LFLVLMPLAGWLENKA 376
CYTB MTH00074
cytochrome b; Provisional
 1-336 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 591.27  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00074  42 LIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00074 122 FLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFL 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00074 202 HETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAI 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00074 282 LRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFL 361

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00074 362 LFIIIIPLTGWLENKL 377
CYTB MTH00191
cytochrome b; Provisional
 1-328 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 577.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00191  38 LIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILL 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00191 118 ILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFL 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00191 198 HETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAI 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00191 278 LRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFF 357


                 ....*...
gi 19908558  321 IILVLLPL 328
Cdd:MTH00191 358 LFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-325 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 558.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00156  31 LMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIIL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00156 111 FLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFL 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00156 191 HQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAI 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00156 271 LRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFL 350


                 ....*
gi 19908558  321 IILVL 325
Cdd:MTH00156 351 YFIIN 355
CYTB MTH00034
cytochrome b; Validated
 1-336 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 553.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00034  41 LIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILF 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00034 121 LLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFL 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00034 201 HQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAI 280

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00034 281 LRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFS 360

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00034 361 LFLFFFPLISYLENKL 376
CYTB MTH00145
cytochrome b; Provisional
 1-336 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 552.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00145  42 LGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00145 122 LLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFL 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00145 202 HETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAI 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFa 320
Cdd:MTH00145 282 LRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF- 360

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00145 361 LFFLILPLVQKLWDNI 376
CYTB MTH00016
cytochrome b; Validated
 1-336 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 513.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00016  42 LVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILL 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00016 122 LLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFL 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00016 202 HQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAI 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFa 320
Cdd:MTH00016 282 LRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF- 360

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00016 361 FYFMINPLLMKLWDKL 376
CYTB MTH00053
cytochrome b; Provisional
 1-336 3.10e-169

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 475.74  E-value: 3.10e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00053  42 LIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIF 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00053 122 LLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIAL 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00053 202 HEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAI 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00053 282 LRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFA 361

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00053 362 YFLILMPLAGYLENKL 377
CYTB MTH00022
cytochrome b; Validated
 1-336 3.71e-168

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 472.65  E-value: 3.71e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00022  40 LVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIF 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00022 120 LLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYL 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00022 200 HVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAI 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00022 280 LRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFF 359

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00022 360 YFLVLIPLLGELENQL 375
CYTB MTH00224
cytochrome b; Provisional
 1-336 1.85e-154

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 438.20  E-value: 1.85e-154
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00224  42 LVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILF 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00224 122 ILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFL 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00224 202 HQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAI 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFa 320
Cdd:MTH00224 282 LRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF- 360

                        330
                 ....*....|....*.
gi 19908558  321 IILVLLPLASILENKL 336
Cdd:MTH00224 361 SYFIISPAISKLWDDL 376
CYTB MTH00033
cytochrome b; Provisional
 1-334 1.75e-128

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 372.35  E-value: 1.75e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00033  38 LGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIF 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00033 118 FIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTL 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYS--PNLLGDPENFTPANPLSTPPHIKPEWYFLFAY 238
Cdd:MTH00033 198 HEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAY 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  239 AILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPV-EHPFIIIGQLASFT 317
Cdd:MTH00033 278 AILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIF 357

                        330
                 ....*....|....*..
gi 19908558  318 YFAIILVLLPLASILEN 334
Cdd:MTH00033 358 YFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-333 1.17e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 360.26  E-value: 1.17e-123
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSY-----LNketWNV 75
Cdd:COG1290  50 FVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreLN---WII 126

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  76 GVLLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTL 154
Cdd:COG1290 127 GVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVV 206

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558 155 VHLTFLHETGSNNPLGI----PSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNllGDPENFTPANPLSTPPHIKP 230
Cdd:COG1290 207 LHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQP 284

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558 231 EWYFLFAYAILRSIP--NKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTWVGSQPVehPFI 308
Cdd:COG1290 285 DWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IAT 362

                       330       340
                ....*....|....*....|....*
gi 19908558 309 IIGQLASFTYFAIILVLLPLASILE 333
Cdd:COG1290 363 LLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-326 1.60e-109

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 323.04  E-value: 1.60e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00086  30 LVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIY 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00086 110 LLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSDCDKIPFHPYYSVKDILGFaLMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAI 240
Cdd:MTH00086 190 HSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAI 268

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  241 LRSIPNKLGGVLALAASILVLFLMPLLHTSklrSMTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASFTYFA 320
Cdd:MTH00086 269 LRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFF 345


                 ....*.
gi 19908558  321 IILVLL 326
Cdd:MTH00086 346 LILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-316 9.65e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 259.92  E-value: 9.65e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKETWNVGVLLL 80
Cdd:MTH00046  32 MVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILY 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   81 LALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLTFL 160
Cdd:MTH00046 112 LLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYL 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  161 HETGSNNPLGIPSD-CDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYA 239
Cdd:MTH00046 192 HKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYA 271

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19908558  240 ILRSIPNKLGGvLALAASILVLFLMPLLHTSKLRSMtfrpISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLASF 316
Cdd:MTH00046 272 MLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-166 8.52e-75

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 228.79  E-value: 8.52e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLN--KETWNVGVL 78
Cdd:cd00284  33 LVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprELTWVIGVI 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  79 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 158
Cdd:cd00284 113 LLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLL 192


                ....*...
gi 19908558 159 FLHETGSN 166
Cdd:cd00284 193 FLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-164 6.44e-66

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 206.08  E-value: 6.44e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558     1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYG--SYLNKETWNVGVL 78
Cdd:pfam00033  24 LAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVI 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    79 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALHFLLPFVIAGLTLVHLT 158
Cdd:pfam00033 104 LLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLL 183


                  ....*.
gi 19908558   159 FLHETG 164
Cdd:pfam00033 184 FLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 167-314 3.06e-58

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 184.77  E-value: 3.06e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558 167 NPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLALYSPNLLGDPENFTPANPLSTPPHIKPEWYFLFAYAILRSIPN 246
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19908558 247 KLGGVLALAASILVLFLMPLLHTSKLRSmTFRPISQILFWALVANFFVLTWVGSQPVEHPFIIIGQLA 314
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
218-318 4.67e-51

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 164.57  E-value: 4.67e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   218 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHTSKLRSMTFRPISQILFWALVANFFVLTW 297
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 19908558   298 VGSQPVEHPFIIIGQLASFTY 318
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
48-213 4.93e-41

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 141.22  E-value: 4.93e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    48 SLFFICIYFHIGRGIYYGSYLNKE--TWNVGVLLLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMW 125
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   126 GGFSVDNPTLTRFFALHF-LLPFVIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSVKDILGFALMLTVLVTLAL 204
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 19908558   205 YSPNLLGDP 213
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 2-169 3.30e-33

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 122.51  E-value: 3.30e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    2 VVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKE--TWNVGVLL 79
Cdd:PRK03735  53 VIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLI 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   80 LLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHLT 158
Cdd:PRK03735 133 FFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFL 212

                        170
                 ....*....|.
gi 19908558  159 FLHETGSNNPL 169
Cdd:PRK03735 213 MIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-169 1.15e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 107.50  E-value: 1.15e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558    1 LVVQIVTGLFLAMHYTADTSLAFTSVAHTCRNVQYGWLIRNLHANGASLFFICIYFHIGRGIYYGSYLNKE--TWNVGVL 78
Cdd:CHL00070  44 FLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVV 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   79 LLLALMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWMWGGFSVDNPTLTRFFALH-FLLPFVIAGLTLVHL 157
Cdd:CHL00070 124 LAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHF 203

                        170
                 ....*....|..
gi 19908558  158 TFLHETGSNNPL 169
Cdd:CHL00070 204 LMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 189-299 8.11e-14

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 68.10  E-value: 8.11e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558  189 ILGfalMLTVLVTLALYSPNLLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLL- 267
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                         90       100       110
                 ....*....|....*....|....*....|..
gi 19908558  268 HTSKLRSMTFRPISQILFwalVANFFVLTWVG 299
Cdd:CHL00058 116 NVNKFQNPFRRPVATTVF---LIGTAVALWLG 144
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 196-299 5.46e-12

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.89  E-value: 5.46e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558   196 LTVLVTLALYSPNLLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHT-SKLRS 274
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 19908558   275 MTFRPISQILFwaLVANFFVLtWVG 299
Cdd:TIGR01156 123 PFRRPVATTVF--LFGTVVAL-WLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 196-285 5.93e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 62.89  E-value: 5.93e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19908558 196 LTVLVTLALYSPNLLGDPenftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILVLFLMPLLHT-SKLRS 274
Cdd:COG5679  49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQN 123

                        90
                ....*....|.
gi 19908558 275 MTFRPISQILF 285
Cdd:COG5679 124 PFRRPVATAVF 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH