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Conserved domains on  [gi|22550202|gb|AAN01564|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Aulonocara sp. 'gold']

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-327 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 541.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSSTLLIILGLTS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  161 TLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPALT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  241 ALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNNLTGSTPWRLPSTQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320


                 ....*..
gi 22550202  321 LTYPLAT 327
Cdd:MTH00135 321 LTLPLAI 327
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-327 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 541.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSSTLLIILGLTS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  161 TLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPALT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  241 ALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNNLTGSTPWRLPSTQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320


                 ....*..
gi 22550202  321 LTYPLAT 327
Cdd:MTH00135 321 LTLPLAI 327
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 2.72e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.61  E-value: 2.72e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    23 SSHWLLAWMGLEMNTLAIIPLMT-QHHHPRAVEATTKYFLTQATAAATLLFASVTNAWLTGQWEIQQITHPLPST----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    97 ------MITLALALKIGLAPLHAWLPEVLQGLDLTTGLIL-STWQKLAPFALI---LQLQPSS---STLLIILGLTSTLI 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsLLYLPSSpfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   164 GGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSITLLTLLTYFIMTFSTFLVFKL-----NESTNINTLATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 22550202   235 KAPALTALMPLILLSLGGLPPLTGFMPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-299 6.95e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 86.71  E-value: 6.95e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   7 AILLFGLgLGTTITFASSHWLLAWMGLEMNTLAIIPL-MTQHHHPRAVEATTKYFLTqataaatllfASVTNAWL----- 80
Cdd:COG1007 106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLL----------GALSSGFLlygis 174

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  81 -----TGQWEIQQITHPLPST------------MITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALIL 143
Cdd:COG1007 175 llygaTGSLNLAGIAAALAAGganspllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALL 254

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202 144 QL--------QPSSSTLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSITLLTLLTYFIMT 211
Cdd:COG1007 255 RLlveafpglAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMN 334

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202 212 FSTFLVF-----KLNESTNINTLATSWAKAPALTALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSAL 286
Cdd:COG1007 335 LGAFAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSV 414

                       330
                ....*....|...
gi 22550202 287 LSLYFYLRLSYAM 299
Cdd:COG1007 415 ISAYYYLRVVKAM 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-299 4.75e-14

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 72.29  E-value: 4.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202     7 AILLFGLgLGTTITFASSHWLLAWMGLEMNTLAIIPLMT-QHHHPRAVEATTKYFLTQATAAATLLFASVTNAWLTGQWE 85
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    86 IQQITHPLPSTMIT------------LALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSS---- 149
Cdd:TIGR01770 185 FEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgf 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   150 ----STLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSI----TLLTLLTYFIMTFSTFLVF--- 218
Cdd:TIGR01770 265 seawQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsll 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   219 ---KLNESTNINTLATSWAKAPALTALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRL 295
Cdd:TIGR01770 345 rsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424


                  ....
gi 22550202   296 SYAM 299
Cdd:TIGR01770 425 VKVM 428
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-327 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 541.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSSTLLIILGLTS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  161 TLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPALT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  241 ALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNNLTGSTPWRLPSTQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320


                 ....*..
gi 22550202  321 LTYPLAT 327
Cdd:MTH00135 321 LTLPLAI 327
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-327 4.66e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 379.65  E-value: 4.66e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPS-SSTLLIILGLT 159
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLlNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  160 STLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPAL 239
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  240 TALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNNLTGSTPWRLpST 319
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319


                 ....*...
gi 22550202  320 QLTYPLAT 327
Cdd:MTH00070 320 KTNNLLSL 327
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-324 8.23e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 338.34  E-value: 8.23e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPS-SSTLLIILGLT 159
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSlNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  160 STLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPAL 239
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  240 TALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNNLTGSTPWRLPST 319
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320


                 ....*
gi 22550202  320 QLTYP 324
Cdd:MTH00112 321 KNTLT 325
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-327 1.91e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 332.20  E-value: 1.91e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPS-SSTLLIILGLT 159
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSiNPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  160 STLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPAL 239
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  240 TALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNNLTGSTPWRLPST 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320


                 ....*...
gi 22550202  320 QLTYPLAT 327
Cdd:MTH00105 321 KPMTLLPT 328
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-319 5.31e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 298.04  E-value: 5.31e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSS-STLLIILGLT 159
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALnSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  160 STLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPAL 239
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  240 TALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNNLTGSTPWRLPST 319
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-315 1.30e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 240.99  E-value: 1.30e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQL-QPSSSTLLIILGLT 159
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  160 STLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPAL 239
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22550202  240 TALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNNLTGSTPWR 315
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWR 316
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-307 1.05e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 176.17  E-value: 1.05e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGqweiqqITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSSTLLIILglTS 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIII--LS 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  161 TLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPALT 240
Cdd:MTH00160 154 AIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIK 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22550202  241 ALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNN 307
Cdd:MTH00160 234 FLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKN 300
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 10-318 1.84e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 151.96  E-value: 1.84e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   10 LFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWLTGQWEIqqi 89
Cdd:MTH00144  10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS--- 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   90 thplpSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSS--TLLIILGLTSTLIGGWG 167
Cdd:MTH00144  87 -----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWlaYLLCVISVLSALVGSIG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  168 GLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLatSWAKAPALTALMPLIL 247
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGLSIISL 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22550202  248 LSLGG-LPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTLTISPNNLTGSTPWRLPS 318
Cdd:MTH00144 240 LLSLGgLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 15-327 6.05e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 148.00  E-value: 6.05e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   15 LGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASvtnawlTGQWEIQQITHPLP 94
Cdd:MTH00011  17 LGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNIT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   95 STMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSSTLLII-LGLTSTLIGGWGGLNQTQ 173
Cdd:MTH00011  91 ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTsMAAMSALAGGLGGMNQTQ 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  174 LRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPALTALMPLILLSLGGL 253
Cdd:MTH00011 171 LRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGL 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22550202  254 PPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAMTlTISPNNLTGSTPWRLPSTQLTYPLAT 327
Cdd:MTH00011 251 PPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSSLKSAPYEPKTKILISMCT 323
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-297 4.08e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 143.27  E-value: 4.08e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    8 ILLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLlfasvtnawLTGQWEIQ 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALL---------LMGGSLSF 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   88 Q--ITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFaLILQLQPSSSTLLIILGLTSTLIGG 165
Cdd:MTH00197  73 SnlYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPL-LILAFNSSSFMGLLICSVLSSLIGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLATSWAKAPALTALMPL 245
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 22550202  246 ILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSY 297
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 2.72e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 91.61  E-value: 2.72e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    23 SSHWLLAWMGLEMNTLAIIPLMT-QHHHPRAVEATTKYFLTQATAAATLLFASVTNAWLTGQWEIQQITHPLPST----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    97 ------MITLALALKIGLAPLHAWLPEVLQGLDLTTGLIL-STWQKLAPFALI---LQLQPSS---STLLIILGLTSTLI 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsLLYLPSSpfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   164 GGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSITLLTLLTYFIMTFSTFLVFKL-----NESTNINTLATSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 22550202   235 KAPALTALMPLILLSLGGLPPLTGFMPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-266 4.61e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 92.40  E-value: 4.61e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   15 LGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHP-RAVEATTKYF-------------LTQATAAATLLFASVTNAWL 80
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFvlgalssglflfgCALLCGTTGGLHLSYINLVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSSTLLiILGLTS 160
Cdd:MTH00196  84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILL-IGGLFS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  161 TLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQF----SPSITLLTLLTYFIMT---FSTFLVFKLNESTNINTLATSw 233
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSicvFSIILALNVYKNLIIEFSGLS- 241

                        250       260       270
                 ....*....|....*....|....*....|...
gi 22550202  234 AKAPALTALMPLILLSLGGLPPLTGFMPKWLIL 266
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-299 6.95e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 86.71  E-value: 6.95e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   7 AILLFGLgLGTTITFASSHWLLAWMGLEMNTLAIIPL-MTQHHHPRAVEATTKYFLTqataaatllfASVTNAWL----- 80
Cdd:COG1007 106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLL----------GALSSGFLlygis 174

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  81 -----TGQWEIQQITHPLPST------------MITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALIL 143
Cdd:COG1007 175 llygaTGSLNLAGIAAALAAGganspllllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALL 254

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202 144 QL--------QPSSSTLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVL----QFSPSITLLTLLTYFIMT 211
Cdd:COG1007 255 RLlveafpglAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMN 334

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202 212 FSTFLVF-----KLNESTNINTLATSWAKAPALTALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSAL 286
Cdd:COG1007 335 LGAFAVIlllsrKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSV 414

                       330
                ....*....|...
gi 22550202 287 LSLYFYLRLSYAM 299
Cdd:COG1007 415 ISAYYYLRVVKAM 427
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-266 7.70e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 86.61  E-value: 7.70e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    8 ILLFGLGLGTTITFASSHWLLAWMGLEMNTLAI-IPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWLTGQWEI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   87 QQITHPLPS----TMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSSTLLIILGLtSTL 162
Cdd:MTH00199 181 QGINSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVL-SII 259

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  163 IGGWGGLNQTQLRKILAYSSIAHLGWMILVLQF----SPSITLLTLLTYFIMT---FSTFLVFKLNESTNINTLATSwAK 235
Cdd:MTH00199 260 YGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYVIMSicsFSIILSLKLTKGLIVEVSGLS-RK 338

                        250       260       270
                 ....*....|....*....|....*....|.
gi 22550202  236 APALTALMPLILLSLGGLPPLTGFMPKWLIL 266
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
97-299 3.09e-16

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 79.09  E-value: 3.09e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   97 MITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALIL--------QLQPSSSTLLIILGLTSTLIGGWGG 168
Cdd:PRK05777 209 FLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrllvvafgGLSEDWQQVLAIIAIASMLVGNLAA 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  169 LNQTQLRKILAYSSIAHLGWMILVL----QFSPSITLLTLLTYFIMTFSTFLVF-----KLNESTNINTLATSWAKAPAL 239
Cdd:PRK05777 289 LSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFGVIsllrrKGGEAESISDFAGLSKRSPLL 368

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  240 TALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYAM 299
Cdd:PRK05777 369 AAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLM 428
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-299 4.75e-14

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 72.29  E-value: 4.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202     7 AILLFGLgLGTTITFASSHWLLAWMGLEMNTLAIIPLMT-QHHHPRAVEATTKYFLTQATAAATLLFASVTNAWLTGQWE 85
Cdd:TIGR01770 106 ILLLFAL-LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    86 IQQITHPLPSTMIT------------LALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSS---- 149
Cdd:TIGR01770 185 FEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgf 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   150 ----STLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSI----TLLTLLTYFIMTFSTFLVF--- 218
Cdd:TIGR01770 265 seawQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLsll 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   219 ---KLNESTNINTLATSWAKAPALTALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRL 295
Cdd:TIGR01770 345 rsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424


                  ....
gi 22550202   296 SYAM 299
Cdd:TIGR01770 425 VKVM 428
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-217 3.73e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 63.72  E-value: 3.73e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    9 LLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAV---------EATTKYFLTQATAAATLLFASVTNAW 79
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   80 LTGQ--------------WEIQQITHPLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQL 145
Cdd:MTH00198 273 FTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL 352

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22550202  146 QPSSStLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLT----LLTYFIMTFSTFLV 217
Cdd:MTH00198 353 VITSK-LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASFTV 427
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-273 2.64e-10

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 60.93  E-value: 2.64e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   9 LLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWLTGQWEIQQ 88
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  89 ITHPLPS----------TMITLALALKIGLAPLHAWLPE-----------VLQGLDLTTGL--ILSTWQKLAPFALILQL 145
Cdd:COG0651 192 LAARLAEldpglllaafALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFL 271

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202 146 QPssstLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMT--------FSTFLV 217
Cdd:COG0651 272 GT----LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHalakallfLAAGAI 347

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 22550202 218 FKLNESTNINTLATSWAKAPALTALMPLILLSLGGLPPLTGFMPKWLILQELTKQG 273
Cdd:COG0651 348 ERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAG 403
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 100-191 1.18e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 56.10  E-value: 1.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   100 LALALKIGLAPLHAWLPEV-LQGLDLTTGLILSTWQKLAPFALI---LQLQPSSS----TLLIILGLTSTLIGGWGGLNQ 171
Cdd:TIGR01972 211 IAFAVKVPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFLrfnLPLFPDASlyfaPVLAALGVIAIIYGALIALAQ 290

                          90       100
                  ....*....|....*....|
gi 22550202   172 TQLRKILAYSSIAHLGWMIL 191
Cdd:TIGR01972 291 TDIKRLIAYSSISHMGFVLL 310
ndhB CHL00049
NADH dehydrogenase subunit 2
 98-295 3.05e-08

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 54.62  E-value: 3.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   98 ITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQ----PSSST----LLIILGLTSTLIGGWGGL 169
Cdd:CHL00049 220 ITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFdipfYFSSNewhlLLEILAILSMILGNLIAI 299

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  170 NQTQLRKILAYSSIAHLGW-MILVLQFSPSITLLTLLTYFIM-------TFSTFLVFKLNEST-NINTLATSWAKAPALT 240
Cdd:CHL00049 300 TQTSMKRMLAYSSIGQIGYvIIGIIVGDSNDGYASMITYMLFyifmnlgTFACIVLFGLRTGTdNIRDYAGLYTKDPFLA 379

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 22550202  241 ALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRL 295
Cdd:CHL00049 380 LSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 78-193 8.94e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 50.15  E-value: 8.94e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  78 AWLTGQWEIQQI----THPLPSTMITLALAL-------KIGLAPLHAWLPEVLQG-----------LDLTTGLILstwqk 135
Cdd:COG1009 186 GAIAGTLNFSELlaaaPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPDAMEGptpvsallhaaTMVKAGVYL----- 260

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 22550202 136 LAPFALILQLQPSSSTLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193
Cdd:COG1009 261 LARLSPLFALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 290-327 1.18e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 44.94  E-value: 1.18e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 22550202   290 YFYLRLSYAMTLTISPNNLTGSTPWRLPSTQLTYPLAT 327
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPT 38
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 100-191 2.33e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 48.92  E-value: 2.33e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202 100 LALALKIGLAPLHAWLPEVLQ-----GLDLTTGLILstwqKLAPFALI---LQLQPSSS----TLLIILGLTSTLIGGWG 167
Cdd:COG1008 217 IAFAVKVPMFPFHTWLPDAHVeaptaGSVLLAGVLL----KMGGYGLLrfaLPLFPEASayfaPLLAALGVIGIIYGALV 292

                        90       100
                ....*....|....*....|....
gi 22550202 168 GLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:COG1008 293 ALAQTDLKRLIAYSSVSHMGFVLL 316
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 28-193 3.76e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 3.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   28 LAWMGLEMNTLAIIPLMTQHHHPRAVEATTKYF----------LTQATAAATLLFASVTNAWLTGQW-EIQQITHPLPST 96
Cdd:PRK06458 132 LMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafaLFGTILVYANAATVMGDGEMAILWtELLKHASLLDPT 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   97 MITLALAL-------KIGLAPLHAWLPE-----------VLQGLDLTTGLILSTWQKLAPFALILQLQPSssTLLIILGL 158
Cdd:PRK06458 212 LMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYILIDAAIGSDFPG--RLLLIFGL 289

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 22550202  159 TSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193
Cdd:PRK06458 290 LSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFAL 324
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-193 1.72e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.46  E-value: 1.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQI-THPLPSTMITLALAL-------KIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSSTL 152
Cdd:PRK12644 184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADV 263

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 22550202  153 ------LIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193
Cdd:PRK12644 264 pvwrptVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
96-202 1.91e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 46.24  E-value: 1.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   96 TMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILS-TWQKLAPFALI---LQLQPSSSTL----LIILGLTSTLIGGWG 167
Cdd:PRK07363 209 TGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGgVLAKLGTYGLLrfgLQLFPQTWSLvapgLAIIGTISVIYGALS 288

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 22550202  168 GLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLL 202
Cdd:PRK07363 289 AIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 75-191 2.46e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.58  E-value: 2.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   75 VTNAWLTGQWEIQQI-THPLPSTMITL-------ALALKIGLAPLHAWLPEVLQ-----GLDLTTGLILstwqKLAPFAL 141
Cdd:PRK05846 186 VVYYNATGTFDIADLlNLPLPPGVQYWlflaffiAFAVKMPMFPLHTWLPDAHVqaptaGSVLLAGILL----KMGAYGL 261

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 22550202  142 I---LQLQPSSS----TLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:PRK05846 262 LrfsLPLFPDAShefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTL 318
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
102-262 2.55e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 45.81  E-value: 2.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  102 LALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQ----PSSST----LLIILGLTSTLIGGWGGLNQTQ 173
Cdd:PRK02504 220 IAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLvtafPSFDEqwklLFTALAILSMVLGNVVALAQTS 299

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  174 LRKILAYSSIAHLGWMILVL----QFSPSITLLTLLTYFIMT---FSTFLVFKLNESTN-INTLATSWAKAPALTALMPL 245
Cdd:PRK02504 300 MKRMLAYSSIGQAGFVMIGLvagtEAGYASMVFYLLAYLFMNlgaFACVILFSLRTGTDqISDYAGLYQKDPLLTLGLSL 379

                        170
                 ....*....|....*..
gi 22550202  246 ILLSLGGLPPLTGFMPK 262
Cdd:PRK02504 380 CLLSLGGIPPLAGFFGK 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-269 3.87e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 45.26  E-value: 3.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   97 MITLALALKIGLAPLHAWLPEVLQGLDLTTGLILS-TWQKLAPFALI----------LQLQPSSSTLLIILGLTSTLIGG 165
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALIriyftvfggdFRFALGLGWLLAVLALLSMLVGS 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFS----PSITLLTLLTYFIMTFSTFL----VFKLNESTNINTLATSWAKAP 237
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLtplaLAAGLLHLLHHALMKGALFLaagaIEVTYGTRRLSELSGLGRRMP 366

                        170       180       190
                 ....*....|....*....|....*....|..
gi 22550202  238 ALTALMPLILLSLGGLPPLTGFMPKWLILQEL 269
Cdd:PRK08375 367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGA 398
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 92-299 4.15e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 44.96  E-value: 4.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   92 PLPSTMITLALAL-----KIGLAPLHAWLPEV-----------LQGLDLTTG---------LILSTWQKLAPFALILqlq 146
Cdd:PRK12667 218 PPLALGVALALALwaftiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAAL--- 294

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  147 pssSTLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFI-------MTFSTFLVF- 218
Cdd:PRK12667 295 ---SPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksLLFLASGVFi 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  219 KLNESTNINTLATSWAKAPALTALMPLILLSLGGLPPLTGFMPKWLILQELTKQGLAPTATLAALSALLSLYFYLRLSYA 298
Cdd:PRK12667 372 HAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451


                 .
gi 22550202  299 M 299
Cdd:PRK12667 452 L 452
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 97-231 1.69e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 42.55  E-value: 1.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   97 MITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSSTLLIILGLTSTLIGGWgglNQTQLRK 176
Cdd:MTH00091  62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQMF---LLKSYKN 138

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 22550202  177 ILAYSSIAHLGWMILVLQFSPSITLLTLLTYFIMTFSTFLVFKLNESTNINTLAT 231
Cdd:MTH00091 139 LLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWET 193
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-207 1.69e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 43.14  E-value: 1.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  111 LHAWLPEVLQGLDLTTGLI-LSTWQKLAPFALI-----LQLQPSSSTLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIA 184
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIhAATMVTAGVFLLIrssplFEQAPLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                         90       100
                 ....*....|....*....|....
gi 22550202  185 HLGWMILVLQFSP-SITLLTLLTY 207
Cdd:MTH00020 309 QLGYMVVACGLSHySISLFHLMNH 332
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 100-191 3.00e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.33  E-value: 3.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  100 LALALKIGLAPLHAWLPEVLQGLDLTTGLILS-TWQKLAPFALI---LQLQPSS----STLLIILGLTSTLIGGWGGLNQ 171
Cdd:PRK12561 193 IAFGVKLPIFPLHTWLPDAHGEASAPVSMILAgVLLKMGGYALIrfnVQMLPDAhvyfAPALAILGVVNIIYGALNAFAQ 272

                         90       100
                 ....*....|....*....|
gi 22550202  172 TQLRKILAYSSIAHLGWMIL 191
Cdd:PRK12561 273 DNVKRRLAYSSVSHMGFVLL 292
PRK12650 PRK12650
DUF4040 family protein;
110-190 5.39e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 5.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  110 PLHAWLPEVLQGLD-----------LTTGLILstwqkLAPFALILQLQPSSSTLLIILGLTSTLIGGWGGLNQTQLRKIL 178
Cdd:PRK12650 226 PFHFWLPEAMAAITpvsaflhaaavVKAGIYL-----LLRFSPVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLT 300

                         90
                 ....*....|..
gi 22550202  179 AYSSIAHLGWMI 190
Cdd:PRK12650 301 AYSTVSQLGWIV 312
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 98-266 5.87e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 5.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   98 ITLALALKIGLAPLHAWLPEVLQGLDLTTGLILS-TWQKLAPFALI-----------LQLQPSSSTLLIILGLTSTLIGG 165
Cdd:PRK12662 215 IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIIrivydvfkanfVFTTLPFNNVFMILAALAIVFGS 294

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  166 WGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSITLLTLLTYFI----MTFSTFLV-----FKLNeSTNINTLATSWAKA 236
Cdd:PRK12662 295 VLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVsgsisYHFG-TTKLEDCLNLWKSM 373

                        170       180       190
                 ....*....|....*....|....*....|
gi 22550202  237 PALTALMPLILLSLGGLPPLTGFMPKWLIL 266
Cdd:PRK12662 374 PKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 96-191 5.96e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 41.28  E-value: 5.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   96 TMITLALALKIGLAPLHAWLPE-----------VLQGLDLTTGLilstWQKLAPFALILQLQ--PSSSTLLIILGLTSTL 162
Cdd:PRK08676 210 LFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGI----YGILRLSALLRQSGaaEQFSNVLIGLGIFSIA 285

                         90       100
                 ....*....|....*....|....*....
gi 22550202  163 IGGWGGLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:PRK08676 286 VAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
110-191 6.19e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 41.55  E-value: 6.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  110 PLHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQPSSS------TLLIILGLTSTLIGGWGGLNQTQLRKILAYSSI 183
Cdd:PRK07376 245 PLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPVFEqfpavmTVIAWTGAITAFLGASIALTQNDIKKGLAYSTI 324


                 ....*...
gi 22550202  184 AHLGWMIL 191
Cdd:PRK07376 325 SQLGYMVM 332
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-193 8.09e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 8.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  111 LHAWLPEVLQGLDLTTGLILSTWQKLAPFALILQLQP----SSSTLLII--LGLTSTLIGGWGGLNQTQLRKILAYSSIA 184
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPlfekAPLTLLIItiFGALTAFFAATVGLVQNDLKKVIAYSTCS 323


                 ....*....
gi 22550202  185 HLGWMILVL 193
Cdd:MTH00032 324 QLGYMVLII 332
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
98-191 1.06e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.45  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   98 ITLALALKIGLAPLHAWLPE-----------VLQG--LDLTT--------GLILSTWQKLAPFalilqlqpssstlLIIL 156
Cdd:PRK06473 211 ILVGFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTygllrfgvGLFPEAWVYLAPW-------------LATW 277

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 22550202  157 GLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:PRK06473 278 AVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-193 1.50e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   98 ITLALALKIGLAPLHAWLPEV-----LQGLDLTTGLILstwqKLAPFALILQLQP-------SSSTLLIILGLTSTLIGG 165
Cdd:MTH00226 236 IFLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSWPilplgaqNLAPAVIAMGIVGIVYGS 311

                         90       100
                 ....*....|....*....|....*...
gi 22550202  166 WGGLNQTQLRKILAYSSIAHLGWMILVL 193
Cdd:MTH00226 312 FATCRQIDVKRLVAYSSVAHMGLVSITL 339
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-200 1.73e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 40.04  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  100 LALALKIGLAPLHAWLPEV-----LQGLDLTTGLILstwqKLAPFALI---LQLQPSSS----TLLIILGLTSTLIGGWG 167
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLL----KLGGYGFIrfsWPLLPEASeyfsPLIQTLSLLAIIYGSLT 289

                         90       100       110
                 ....*....|....*....|....*....|...
gi 22550202  168 GLNQTQLRKILAYSSIAHLGWMILVLqFSPSIT 200
Cdd:MTH00217 290 TCRQVDLKRIIAYSSVAHMGLVTLGI-FSHTIQ 321
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 96-193 2.81e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 39.36  E-value: 2.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   96 TMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILSTW-QKLAPFAL-----ILQLQPSSST---LLIILGLTSTLIGGW 166
Cdd:PRK08377 210 ALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFvVKAGLYAMarilyLMQNANGWSSvlkLVIIMATLTVFFAEL 289

                         90       100
                 ....*....|....*....|....*..
gi 22550202  167 GGLNQTQLRKILAYSSIAHLGWMILVL 193
Cdd:PRK08377 290 SALRQKNVKRMIAYSSIGQVGMIALAL 316
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-205 4.28e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.94  E-value: 4.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202    1 MNPYILAILLFGLGlGTTITFasshwLLAWMglEMNTLAIIPLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWL 80
Cdd:PRK08667 117 TALFILSMLGVVAS-ANTFSF-----LFFWE--IMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQ 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   81 TGQWEIQQITHP-----LPSTMITLALALKIGLAPLHAWLPEVLQGLD-----LTTGLILstwqKLAPFALILQLQPSSS 150
Cdd:PRK08667 189 TGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSGVML----KVAVYGLVRFLMDVLS 264

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22550202  151 ------TLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIAHLG--------WMILVLQFSPSITLLTLL 205
Cdd:PRK08667 265 pelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLDTLALLALG 333
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 110-193 6.27e-03

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 38.42  E-value: 6.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   110 PLHAWLPEVLQGLDLTTGLILSTWQKLAPFALI------LQLQPSSSTLLIILGLTSTLIGGWGGLNQTQLRKILAYSSI 183
Cdd:TIGR01974 231 PLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVartsplFELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTM 310

                          90
                  ....*....|
gi 22550202   184 AHLGWMILVL 193
Cdd:TIGR01974 311 SQLGYMFLAL 320
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 111-192 6.76e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 38.07  E-value: 6.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  111 LHAWLPEVLQGLDLTTGLILSTWQKLAPFALIL------QLQPSSSTLLIILGLTSTLIGGWGGLNQTQLRKILAYSSIA 184
Cdd:MTH00210 230 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIrsgplfEGSPLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCS 309


                 ....*...
gi 22550202  185 HLGWMILV 192
Cdd:MTH00210 310 QLGYMVMV 317
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 100-203 8.83e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 37.74  E-value: 8.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202  100 LALALKIGLAPLHAWLPEV-----LQGLDLTTGLILstwqKLAPFALI---LQLQPSSST----LLIILGLTSTLIGGWG 167
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAhveapVAGSVILAGILL----KLGGYGFLrfsWPLFPAASEyfapLIVMLSVIAVIYGSLT 292

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 22550202  168 GLNQTQLRKILAYSSIAHLGWMILVLqFSPSITLLT 203
Cdd:MTH00204 293 TCRQVDFKRLIAYSSVAHMGLVPLGL-FTHTIEGLV 327
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 92-216 8.87e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 37.62  E-value: 8.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   92 PLPSTMITLALALKIGLAPLHAWLPEVLQGLDLTTGLILS-TWQKLAPFALI--LQLQPSSSTLLIILGLTSTLIGGWGG 168
Cdd:PRK07234 184 PEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVrcALDVPGLDLIVRIFGVGTALLGVLFA 263

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 22550202  169 LNQTQLRKILAYSSIAHLGWMILvlqfSPSITLLTLLTYFIMTFSTFL 216
Cdd:PRK07234 264 LLEKDLKRMLAFSTISQLGFILA----APLVGGLYALAHGLVKSTLFL 307
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-191 8.89e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 37.76  E-value: 8.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   18 TITFASSHWLL---AWM--GLEMNTLaiipLMTQHHHPRAVEATTKYFLTQATAAATLLFASVTNAWLTGQWEIQQI--- 89
Cdd:PRK08168 114 HLLVLSDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22550202   90 ------THPLPSTMITLALA--LKIGLAPLHAWLPEVLQGLDLTTGLILSTWQKLAPFALI-----LQLQPSSSTLLIIL 156
Cdd:PRK08168 190 laaqgaSPSLQAAALLLVLAviLKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIrfaplLEQAPPARWLLVLV 269

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 22550202  157 GLTSTLIGGWGGLNQTQLRKILAYSSIAHLGWMIL 191
Cdd:PRK08168 270 GLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLL 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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